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scnpilot_solids2_trim150_scaffold_2102

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2102_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..942)
DNA (942bp) protein (314aa)
ATPase AAA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCL0_9GAMM
ATPase AAA {ECO:0000313|EMBL:EIL97201.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
AAA+ family ATPase
scnpilot_solids2_trim150_scaffold_2102_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1241..2347
DNA (1107bp) protein (369aa)
Glucose/sorbosone dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=M4NA27_9GAMM
glucose/sorbosone dehydrogenase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2102_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2437..3060
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU66_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90757.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phospholipid-binding protein, PBP family
scnpilot_solids2_trim150_scaffold_2102_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3165..3320
DNA (156bp) protein (52aa)
UPF0391 membrane protein UU7_14990 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU65_9GAMM
UPF0391 membrane protein UU7_14990 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF1328)
scnpilot_solids2_trim150_scaffold_2102_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3361..3723
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA39_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2102_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3731..4216
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAA0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96391.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2102_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4213..4551
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU62_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90753.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2102_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4548..5741
DNA (1194bp) protein (398aa)
Putative permease n=1 Tax=Rhodanobacter denitrificans RepID=M4NBT9_9GAMM
putative permease
Putative permease {ECO:0000313|EMBL:AGG87242.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2102_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5801..6166
DNA (366bp) protein (122aa)
Mannose-6-phosphate isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUN8_9GAMM
mannose-6-phosphate isomerase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2102_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6204..6551)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU60_9GAMM
periplasmic component of the Tol biopolymer transport system
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2102_11
unknown

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comp(6750..7217)
DNA (468bp) protein (156aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2102_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7529..7807
DNA (279bp) protein (93aa)
type I restriction enzyme methyltransferase subunit; K03427 type I restriction enzyme M protein [EC:2.1.1.72]
Type I restriction enzyme methyltransferase subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKJ4_9GAMM
Type I restriction enzyme methyltransferase subunit {ECO:0000313|EMBL:EIL99985.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids2_trim150_scaffold_2102_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8066..8323
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA47_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87254.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2102_14
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8338..9372)
DNA (1035bp) protein (345aa)
Zinc-binding dehydrogenase family oxidoreductase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UJQ3_MYXSD rbh
Uncharacterized protein {ECO:0000313|EMBL:AJW43995.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
zinc-binding dehydrogenase family oxidoreductase rbh
scnpilot_solids2_trim150_scaffold_2102_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9402..10148)
DNA (747bp) protein (249aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter denitrificans RepID=I4WUQ0_9GAMM
short-chain dehydrogenase of unknown substrate specificity
Uncharacterized protein {ECO:0000313|EMBL:AGG87255.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2102_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10145..11725)
DNA (1581bp) protein (527aa)
NodT family efflux transporter outer membrane lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL28_9GAMM
NodT family efflux transporter outer membrane lipoprotein {ECO:0000313|EMBL:EIL87919.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
efflux transporter, outer membrane factor lipoprotein, NodT family
scnpilot_solids2_trim150_scaffold_2102_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11725..12198)
DNA (474bp) protein (158aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU44_9GAMM
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter {ECO:0000313|EMBL:EIL90735.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
Displaying 17 items

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