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scnpilot_solids2_trim150_scaffold_2236

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2236_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..262)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLL3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88561.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2236_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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392..1825
DNA (1434bp) protein (478aa)
GntR family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6E2_9GAMM
GntR family transcriptional regulator {ECO:0000313|EMBL:EIL95033.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcriptional regulator with HTH domain and aminotransferase domain
scnpilot_solids2_trim150_scaffold_2236_3
Burkholderia phenoliruptrix, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1958..2371
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Acinetobacter calcoaceticus RepID=UPI0002FCD21A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFT89682.1}; TaxID=1229205 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phenoliruptrix BR3459a.;"
scnpilot_solids2_trim150_scaffold_2236_4
unknown

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2368..2820
DNA (453bp) protein (151aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2236_5
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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2897..3655
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B2A044_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB77380.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
scnpilot_solids2_trim150_scaffold_2236_6
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3675..4328)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPQ1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ10319.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
scnpilot_solids2_trim150_scaffold_2236_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4371..5120)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C85FF
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67523.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_solids2_trim150_scaffold_2236_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5132..6109)
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034AF9C5 rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67524.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_solids2_trim150_scaffold_2236_9
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6166..7221)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034916CC rbh
Permease of the major facilitator superfamily {ECO:0000313|EMBL:BAO84521.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2236_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7268..7564)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4D1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94322.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_2236_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7684..10422
DNA (2739bp) protein (913aa)
Serine/threonine protein kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4D0_9GAMM rbh
Serine/threonine protein kinase {ECO:0000313|EMBL:EIL94321.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
serine/threonine protein kinase rbh
scnpilot_solids2_trim150_scaffold_2236_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10687..10824
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPG5_9GAMM
pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein C
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2236_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10803..11408
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWB2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91503.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein C
scnpilot_solids2_trim150_scaffold_2236_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11527..14235
DNA (2709bp) protein (903aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPG6_9GAMM
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EIM01358.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids2_trim150_scaffold_2236_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14340..15317
DNA (978bp) protein (326aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Lipoyl synthase n=2 Tax=Rhodanobacter denitrificans RepID=I4WS70_9GAMM
lipoate synthase
scnpilot_solids2_trim150_scaffold_2236_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15364..17085)
DNA (1722bp) protein (574aa)
Xaa-Pro aminopeptidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPH1_9GAMM
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:EIM01363.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Xaa-Pro aminopeptidase
scnpilot_solids2_trim150_scaffold_2236_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17229..17354
DNA (126bp) protein (42aa)
CTP synthase; K01937 CTP synthase [EC:6.3.4.2]
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
CTP synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VK66_9GAMM
Displaying 17 items

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