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scnpilot_solids2_trim150_scaffold_2763

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2763_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..318)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348D2F2
Uncharacterized protein {ECO:0000313|EMBL:AIF47811.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_solids2_trim150_scaffold_2763_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(544..1203)
DNA (660bp) protein (220aa)
Universal bacterial protein YeaZ n=1 Tax=Rhodanobacter denitrificans RepID=M4NGZ6_9GAMM
universal bacterial protein YeaZ
Universal bacterial protein YeaZ {ECO:0000313|EMBL:AGG90220.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2763_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1200..1613)
DNA (414bp) protein (138aa)
Inner membrane protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKP8_9GAMM
Inner membrane protein {ECO:0000313|EMBL:EIL87789.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Inner membrane protein involved in colicin E2 resistance
scnpilot_solids2_trim150_scaffold_2763_4
unknown

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1735..2640
DNA (906bp) protein (302aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2763_5
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2586..3365)
DNA (780bp) protein (260aa)
ABC transporter substrate-binding protein n=1 Tax=Nevskia ramosa RepID=UPI0003B5FCC2
Periplasmic binding protein {ECO:0000313|EMBL:EIT70015.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_2763_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3443..4060)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4S2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94463.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2763_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4124..4513)
DNA (390bp) protein (130aa)
Terminal quinol oxidase membrane protein subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4S1_9GAMM
Terminal quinol oxidase membrane protein subunit {ECO:0000313|EMBL:EIL94462.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2763_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4636..5574
DNA (939bp) protein (313aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4S0_9GAMM rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EIL94461.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_2763_9
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

5574..8126
DNA (2553bp) protein (851aa)
type III restriction protein res subunit; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Type III restriction protein res subunit id=1935625 bin=GWD2_Nitrospirae-related_57_8 species=Chlorobium limicola genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=GWC2_Nitrospirae_57_13_curated
scnpilot_solids2_trim150_scaffold_2763_10
Methanosarcina sp. 2.H.T.1A.3, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8145..8978
DNA (834bp) protein (278aa)
DNA-binding protein {ECO:0000313|EMBL:KKG15095.1}; TaxID=1483597 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 2.H.T.1A.3.;"
KilA domain-containing protein rbh
Putative uncharacterized protein id=4349431 bin=GWC2_Nitrospirae_57_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8 rbh
scnpilot_solids2_trim150_scaffold_2763_11
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

8988..11507
DNA (2520bp) protein (840aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI00037FCFD7 rbh
N-6 DNA methylase rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
scnpilot_solids2_trim150_scaffold_2763_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11579..11959)
DNA (381bp) protein (127aa)
Type 11 methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSB8_9GAMM
Type 11 methyltransferase {ECO:0000313|EMBL:EIM02360.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
methylase involved in ubiquinone/menaquinone biosynthesis
Displaying 12 items

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