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scnpilot_solids2_trim150_scaffold_2874

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2874_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..955
DNA (954bp) protein (318aa)
RNAse R (EC:3.1.-.-)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribonuclease R n=1 Tax=Rhodanobacter denitrificans RepID=M4NGE8_9GAMM
scnpilot_solids2_trim150_scaffold_2874_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

952..1698
DNA (747bp) protein (249aa)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB {ECO:0000256|HAMAP-Rule:MF_01887}; EC=2.1.1.185 {ECO:0000256|HAMAP-Rule:MF_01887};; 23S rRNA (guanosine2251 2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; 23S rRNA Gm2251 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
23S rRNA Gm-2251 2'-O-methyltransferase (EC:2.1.1.-) rbh
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIR0_9GAMM rbh
scnpilot_solids2_trim150_scaffold_2874_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1695..1907
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDB1_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88735.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2874_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1988..2308
DNA (321bp) protein (107aa)
Transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WY19_9GAMM
cation/cationic drug transporter
Cation/cationic drug transporter {ECO:0000313|EMBL:AGG88736.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2874_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2392..3114)
DNA (723bp) protein (241aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Rhodanobacter denitrificans RepID=I4WY18_9GAMM rbh
phosphate uptake regulator, PhoU rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2874_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3252..4061)
DNA (810bp) protein (270aa)
Phosphate transporter ATP-binding protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIQ6_9GAMM rbh
phosphate ABC transporter ATP-binding protein, PhoT family rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2874_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4054..4920)
DNA (867bp) protein (289aa)
ABC transporter phosphate permease n=1 Tax=Rhodanobacter denitrificans RepID=I4WY16_9GAMM rbh
phosphate ABC transporter membrane protein 2, PhoT family rbh
Phosphate ABC transporter membrane protein 2, PhoT family {ECO:0000313|EMBL:AGG88739.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2874_8
unknown

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comp(4917..5015)
DNA (99bp) protein (33aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2874_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5015..6034)
DNA (1020bp) protein (340aa)
Phosphate ABC transporter membrane protein 1, PhoT family n=1 Tax=Rhodanobacter denitrificans RepID=I4WY15_9GAMM rbh
phosphate ABC transporter membrane protein 1, PhoT family rbh
Phosphate ABC transporter membrane protein 1, PhoT family {ECO:0000313|EMBL:AGG88740.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2874_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6110..7144)
DNA (1035bp) protein (345aa)
Phosphate-binding protein PstS n=1 Tax=Rhodanobacter denitrificans RepID=M4NLX4_9GAMM rbh
phosphate ABC transporter substrate-binding protein, PhoT family rbh
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2874_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7279..7938)
DNA (660bp) protein (220aa)
RNAse T (EC:3.1.13.-) rbh
Ribonuclease T {ECO:0000256|HAMAP-Rule:MF_00157, ECO:0000256|SAAS:SAAS00051933}; EC=3.1.13.- {ECO:0000256|HAMAP-Rule:MF_00157, ECO:0000256|SAAS:SAAS00051955};; Exoribonuclease T {ECO:0000256|HAMAP-Rule:MF_00157}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribonuclease T n=1 Tax=Rhodanobacter denitrificans RepID=I4WY13_9GAMM rbh
scnpilot_solids2_trim150_scaffold_2874_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8126..9382
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIQ1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL99342.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_2874_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9529..10116)
DNA (588bp) protein (196aa)
High frequency lysogenization protein HflD homolog n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIQ0_9GAMM
High frequency lysogenization protein HflD homolog {ECO:0000256|HAMAP-Rule:MF_00695}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein involved in purine metabolism
scnpilot_solids2_trim150_scaffold_2874_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10127..11224)
DNA (1098bp) protein (366aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61) rbh
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIP9_9GAMM rbh
scnpilot_solids2_trim150_scaffold_2874_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11221..11745)
DNA (525bp) protein (175aa)
ADP-ribose pyrophosphatase n=2 Tax=Rhodanobacter denitrificans RepID=I4WY09_9GAMM rbh
ADP-ribose pyrophosphatase rbh
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:AGG88746.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2874_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11828..12154
DNA (327bp) protein (109aa)
ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWQ2_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2874_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12221..14032
DNA (1812bp) protein (604aa)
ATP-dependent Clp protease ATP-binding subunit ClpA (EC:3.4.21.92)
ATP-dependent Clp protease subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIP6_9GAMM
ATP-dependent Clp protease subunit {ECO:0000313|EMBL:EIL99337.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Displaying 17 items

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