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scnpilot_solids2_trim150_scaffold_2953

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2953_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..345)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2C0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93611.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
TIGR00255 family protein
scnpilot_solids2_trim150_scaffold_2953_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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422..1081
DNA (660bp) protein (220aa)
RNAse PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribonuclease PH n=1 Tax=Rhodanobacter denitrificans RepID=M4NSB2_9GAMM
scnpilot_solids2_trim150_scaffold_2953_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1083..1682
DNA (600bp) protein (200aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae
Non-canonical purine NTP pyrophosphatase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNI8_9GAMM
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
scnpilot_solids2_trim150_scaffold_2953_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1679..2845
DNA (1167bp) protein (389aa)
HemN family oxidoreductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVY8_9GAMM
putative oxygen-independent coproporphyrinogen III oxidase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2953_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2919..5252
DNA (2334bp) protein (778aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2C7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93618.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF1631)
scnpilot_solids2_trim150_scaffold_2953_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5249..5608
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2C8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93619.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PilZ domain-containing protein
scnpilot_solids2_trim150_scaffold_2953_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5721..7037
DNA (1317bp) protein (439aa)
Xaa-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582}; Short=X-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279};; EC=3.4.13.9 {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582};; Imidodipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; Proline dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Xaa-Pro dipeptidase (EC:3.4.13.9)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C2304
scnpilot_solids2_trim150_scaffold_2953_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7165..8175)
DNA (1011bp) protein (337aa)
cytochrome bd ubiquinol oxidase, subunit II protein; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-] rbh
Cytochrome bd ubiquinol oxidase, subunit II protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRL4_9GAMM rbh
Cytochrome bd ubiquinol oxidase, subunit II protein {ECO:0000313|EMBL:EIL89855.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_2953_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8178..8468)
DNA (291bp) protein (97aa)
cytochrome bd ubiquinol oxidase, subunitIprotein; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome bd ubiquinol oxidase, subunitIprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRL5_9GAMM
Cytochrome bd ubiquinol oxidase, subunitIprotein {ECO:0000313|EMBL:EIL89856.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_2953_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8465..9487)
DNA (1023bp) protein (341aa)
cytochrome bd ubiquinol oxidase, subunitIprotein; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome bd ubiquinol oxidase, subunitIprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRL5_9GAMM
Cytochrome bd ubiquinol oxidase, subunitIprotein {ECO:0000313|EMBL:EIL89856.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_2953_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9517..10848)
DNA (1332bp) protein (444aa)
aminopeptidase P (EC:3.4.11.9)
Aminopeptidase P {ECO:0000313|EMBL:AGG90436.1}; EC=3.4.11.9 {ECO:0000313|EMBL:AGG90436.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Aminopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ6_9GAMM
scnpilot_solids2_trim150_scaffold_2953_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10845..11408)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN45_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00887.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2953_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11517..11750
DNA (234bp) protein (78aa)
TIGR02449 family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ8_9GAMM
TIGR02449 family protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2953_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12256..12888
DNA (633bp) protein (211aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1U3_9GAMM
5,10-methenyltetrahydrofolate synthetase
scnpilot_solids2_trim150_scaffold_2953_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12885..13004
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIK8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87049.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
Displaying 15 items

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