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scnpilot_solids2_trim150_scaffold_1505

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1505_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..474
DNA (474bp) protein (158aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Malate dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIW1_9GAMM
malate dehydrogenase
scnpilot_solids2_trim150_scaffold_1505_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(591..1799)
DNA (1209bp) protein (403aa)
Transporter, cpa2 family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXE7_9GAMM rbh
Kef-type K+ transport system, membrane component rbh
Kef-type K+ transport system, membrane component {ECO:0000313|EMBL:AGG89261.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1505_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1875..2801)
DNA (927bp) protein (309aa)
Arabinose efflux permease family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHZ4_9GAMM
Arabinose efflux permease family protein {ECO:0000313|EMBL:EIL99085.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
arabinose efflux permease family protein
scnpilot_solids2_trim150_scaffold_1505_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2777..3289)
DNA (513bp) protein (171aa)
Arabinose efflux permease family protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NEK4_9GAMM
arabinose efflux permease family protein
Arabinose efflux permease family protein {ECO:0000313|EMBL:AGG89260.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1505_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3464..3871
DNA (408bp) protein (136aa)
GreA/GreB family elongation factor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHZ5_9GAMM
GreA/GreB family elongation factor {ECO:0000313|EMBL:EIL99086.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcription elongation factor
scnpilot_solids2_trim150_scaffold_1505_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3933..6323
DNA (2391bp) protein (797aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX04_9GAMM
DNA ligase, NAD-dependent
scnpilot_solids2_trim150_scaffold_1505_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6323..7279
DNA (957bp) protein (319aa)
Elongation factor P--(R)-beta-lysine ligase {ECO:0000256|SAAS:SAAS00088906}; EC=6.3.1.- {ECO:0000256|SAAS:SAAS00088909};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Lysyl-tRNA synthetase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX05_9GAMM
lysyl-tRNA synthetase-like protein GenX
scnpilot_solids2_trim150_scaffold_1505_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7498..8802
DNA (1305bp) protein (435aa)
Major facilitator superfamily permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX08_9GAMM
Major facilitator superfamily permease {ECO:0000313|EMBL:EIL91749.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
arabinose efflux permease family protein
scnpilot_solids2_trim150_scaffold_1505_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8884..9570)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI03_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99094.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
TIGR02453 family protein
scnpilot_solids2_trim150_scaffold_1505_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9643..11085)
DNA (1443bp) protein (481aa)
exonuclease I (EC:3.1.11.1)
Exodeoxyribonuclease I {ECO:0000256|PIRNR:PIRNR000977}; EC=3.1.11.1 {ECO:0000256|PIRNR:PIRNR000977};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Exonuclease I n=1 Tax=Rhodanobacter denitrificans RepID=M4NHV4_9GAMM
scnpilot_solids2_trim150_scaffold_1505_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11155..11718
DNA (564bp) protein (188aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Oligoribonuclease n=1 Tax=Rhodanobacter denitrificans RepID=I4WXF6_9GAMM
oligoribonuclease (3'->5' exoribonuclease)
scnpilot_solids2_trim150_scaffold_1505_12
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11756..12664
DNA (909bp) protein (303aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
dihydropteroate synthase n=1 Tax=Dyella japonica RepID=UPI000304A180 rbh
dihydropteroate synthase
scnpilot_solids2_trim150_scaffold_1505_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12709..14061
DNA (1353bp) protein (451aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Phosphoglucosamine mutase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX13_9GAMM
phosphoglucosamine mutase
scnpilot_solids2_trim150_scaffold_1505_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14162..15097
DNA (936bp) protein (312aa)
Dioxygenase, isopenicillin N synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI08_9GAMM
Dioxygenase, isopenicillin N synthase {ECO:0000313|EMBL:EIL99099.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dioxygenase, isopenicillin N synthase
scnpilot_solids2_trim150_scaffold_1505_15
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15143..15526)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Desulfovibrio longus RepID=UPI0003B43219
Uncharacterized protein {ECO:0000313|EMBL:GAN45057.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
lipoprotein
scnpilot_solids2_trim150_scaffold_1505_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15652..16323)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX15_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91756.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1505_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16325..17137)
DNA (813bp) protein (271aa)
Short chain dehydrogenase/reductase family oxidoreductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI10_9GAMM
Short chain dehydrogenase/reductase family oxidoreductase {ECO:0000313|EMBL:EIL99101.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
short-chain dehydrogenase of unknown substrate specificity
scnpilot_solids2_trim150_scaffold_1505_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17236..17880
DNA (645bp) protein (215aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VN86_9GAMM
Displaying 18 items

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