ggKbase home page

scnpilot_solids2_trim150_scaffold_1928

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1928_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1098)
DNA (1098bp) protein (366aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NADH-quinone oxidoreductase subunit D n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKF9_9GAMM
NADH dehydrogenase I, D subunit
scnpilot_solids2_trim150_scaffold_1928_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1101..1829)
DNA (729bp) protein (243aa)
NADH:ubiquinone oxidoreductase 27 kD subunit (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
NADH-quinone oxidoreductase subunit C n=1 Tax=Rhodanobacter denitrificans RepID=M4NF32_9GAMM
scnpilot_solids2_trim150_scaffold_1928_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1838..2395)
DNA (558bp) protein (186aa)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NADH dehydrogenase subunit B (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKG1_9GAMM rbh
scnpilot_solids2_trim150_scaffold_1928_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2386..2775)
DNA (390bp) protein (130aa)
NADH:ubiquinone oxidoreductase subunit 3 (chain A) (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit A n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKG2_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1928_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3000..3353)
DNA (354bp) protein (118aa)
Type IV pilus assembly PilZ n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6I2_9GAMM
Tfp pilus assembly protein PilZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:EIL95073.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_1928_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3437..6316)
DNA (2880bp) protein (960aa)
Diguanylate cyclase, putative n=1 Tax=Rhodanobacter denitrificans RepID=I4WLR4_9GAMM
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG88603.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1928_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6344..7330)
DNA (987bp) protein (329aa)
Putative LmbE-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLR3_9GAMM
putative LmbE-like protein
Putative LmbE-like protein {ECO:0000313|EMBL:AGG88602.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1928_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7330..8265)
DNA (936bp) protein (312aa)
DNA polymerase III, delta'' subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NLI9_9GAMM
DNA polymerase III, delta'' subunit
DNA polymerase III, delta'' subunit {ECO:0000313|EMBL:AGG88601.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1928_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8262..8903)
DNA (642bp) protein (214aa)
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Thymidylate kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND06_9GAMM
scnpilot_solids2_trim150_scaffold_1928_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8900..9940)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLR0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88599.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1928_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9937..10758)
DNA (822bp) protein (274aa)
4-amino-4-deoxychorismate lyase {ECO:0000313|EMBL:EIL99959.1}; EC=4.1.3.38 {ECO:0000313|EMBL:EIL99959.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
aminodeoxychorismate lyase apoprotein (EC:4.1.3.38)
4-amino-4-deoxychorismate lyase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKG8_9GAMM
scnpilot_solids2_trim150_scaffold_1928_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10758..12104)
DNA (1347bp) protein (449aa)
Anthranilate/para-aminobenzoate synthase component I n=1 Tax=Rhodanobacter denitrificans RepID=M4NF27_9GAMM
anthranilate/para-aminobenzoate synthase component I
Anthranilate/para-aminobenzoate synthase component I {ECO:0000313|EMBL:AGG88597.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1928_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12116..13090)
DNA (975bp) protein (325aa)
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Rhodanobacter denitrificans RepID=I4WLQ7_9GAMM
scnpilot_solids2_trim150_scaffold_1928_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13429..13668)
DNA (240bp) protein (80aa)
Acyl carrier protein n=2 Tax=Rhodanobacter RepID=I4WLQ6_9GAMM
acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_1928_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13841..14584)
DNA (744bp) protein (248aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-ketoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKH2_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1928_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14623..15570)
DNA (948bp) protein (316aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6H1_9GAMM
malonyl CoA-acyl carrier protein transacylase
scnpilot_solids2_trim150_scaffold_1928_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15715..16689)
DNA (975bp) protein (325aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Rhodanobacter denitrificans RepID=I4WLQ3_9GAMM
3-oxoacyl-(acyl-carrier-protein) synthase III
Displaying 17 items

View Taxonomy