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scnpilot_solids2_trim150_scaffold_5781

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_5781_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..382
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSE1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90132.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
membrane protein implicated in regulation of membrane protease activity
scnpilot_solids2_trim150_scaffold_5781_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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379..1653
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSE0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90131.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5781_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1922..2242)
DNA (321bp) protein (107aa)
DNA-binding protein H-NS n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSD9_9GAMM
DNA-binding protein H-NS {ECO:0000313|EMBL:EIL90130.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA-binding protein H-NS
scnpilot_solids2_trim150_scaffold_5781_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2456..4051)
DNA (1596bp) protein (532aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Proline--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSD8_9GAMM
prolyl-tRNA synthetase, family II
scnpilot_solids2_trim150_scaffold_5781_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4121..4552)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ64_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIL90128.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_5781_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4674..5444
DNA (771bp) protein (257aa)
phosphatidylserine synthase (EC:2.7.8.8)
Phosphatidylserine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJK6_9GAMM
Phosphatidylserine synthase {ECO:0000313|EMBL:EIL99647.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_5781_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5441..5908
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJK5_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_5781_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5912..6394
DNA (483bp) protein (161aa)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSD4_9GAMM
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EIL90125.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ribosomal-protein-alanine acetyltransferase
scnpilot_solids2_trim150_scaffold_5781_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6446..9073)
DNA (2628bp) protein (876aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ59_9GAMM
scnpilot_solids2_trim150_scaffold_5781_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9073..9213)
DNA (141bp) protein (47aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKR3_9GAMM
Suspect SCG annotation. See neighboring gene [scnpilot_solids2_trim150_scaffold_5781_9].
scnpilot_solids2_trim150_scaffold_5781_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9450..10025)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ46_9GAMM
YGGT family protein
YGGT family protein {ECO:0000313|EMBL:AGG88009.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_5781_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10022..10846)
DNA (825bp) protein (275aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Pyrroline-5-carboxylate reductase n=1 Tax=Rhodanobacter denitrificans RepID=M4NBI4_9GAMM
pyrroline-5-carboxylate reductase
scnpilot_solids2_trim150_scaffold_5781_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11195..11662
DNA (468bp) protein (156aa)
Twitching motility protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUT4_9GAMM
pilus retraction ATPase PilT
Twitching motility protein {ECO:0000313|EMBL:EIL90975.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Displaying 13 items

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