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scnpilot_solids2_trim150_scaffold_1953_9

Organism: SCNPILOT_SOLID2_TRIM150_Rhodanobacter_68_151

partial RP 30 / 55 MC: 3 BSCG 33 / 51 MC: 5 ASCG 8 / 38 MC: 1
Location: 7891..9228

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-) similarity KEGG
DB: KEGG
  • Identity: 91.0
  • Coverage: 445.0
  • Bit_score: 826
  • Evalue 5.70e-237
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.0
  • Coverage: 445.0
  • Bit_score: 826
  • Evalue 2.50e-236
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Rhodanobacter denitrificans RepID=M4NGW6_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 91.0
  • Coverage: 445.0
  • Bit_score: 826
  • Evalue 1.80e-236

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Taxonomy

Rhodanobacter denitrificans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1338
ATGTCACGTTCCAACTCGGTCTCGCCCACACCCTTTGAAGCACACATCACCGACCTCGGCCACGATGGCCGCGGCGTGGCGCGGATCGACGGCAAGACGGTGTTCGTCAGCGGGGCCTTGCTCGGCGAGCGGGTGATGGCGAAGCTGCGCAAGCGGCACCGGCATTTCGACGAGGCGGAAACGGTCGAGGTGATCACCGCCTCGCCGCATCGGGTCGAACCGAAATGCCGCCATTTCGCGCAGTGCAGCGGCTGCTCGCTGCAGCATCTCGATGCGCCCTCGCAGATCGCCGCCAAGCAACGCGTGCTGGCCGAAAACTTCGAGCGCATCGGCAAGGTCACGCCACAAGCCTGGTTGCCGCCGCTCACCGCCGAACCATGGGGCTATCGGCGCAAGGGTCGGCTGTCGGTACGCAACGTGGCGAAGAAGGGCCGCGTGCTGGTCGGCTTCCGCGAGGAGCAGAACCCGCGTTTCGTCACCGAGATCCGGCAATGCGAAGTGATGCATCCGGCGCTCGGCCCCAAGGTCGGGTTGCTGGCCGAGCTGCTGGGCACCATGGATGCGGCCGAGGACATCCCGCAGATCGAATTCGCCGCCGGCGACGAGCTGATGGCGCTGGTGTTCCGCCACATGCAGCCGCTCAGCGAACACGACCAGGCCGCGCTGGTCGCGTTCGGCCGGCAGCACGGTTTCGCGATCTACCTGCAGCCGGGCGGCATCAGCAGCGTGCATCCGTTGTGGCCGGAAAACCCGCGGCTGGCCTTCACGATCGCCAGTGGGGACGCGCGCTTCGCCGACGTCGAGCTGGAGTTCCAGCCGCTCGATTTCGTGCAGGTCAACGCCGGCATGAATCAGTTGATGATGGCGCGCGCGATGGAGCTGCTCGACCCGCAGCCGGCCGATCGCGTGCTCGACCTGTTCTGCGGCCTCGGCAACTTCACCCTGCCGATCGCGCGGCGGGTGGCCGAGGTCGTCGGCGTGGAAGGCGAGCACGGCCTGGTCGAGCGCGCCGCGCAGAACGCCGCGCGCAACGGCATCGCCAACGCGCGCTTCCACGTCGCCAACCTGTTCGAGGACCAGCGCGCCACCGAGTGGGCGCGCCAGCCGTGGGACAAGCTGCTGCTCGATCCGCCGCGTGCGGGCGCCGACAAGGTGCTCGACTACCTGCCGCACAAGGCGACCAGACGCATCGTCTACGTCTCCTGCCATCCCGCCTCGCTGGCGCGCGACGCCGGCATCCTGGTCAACCGGCACGGCTTCAGGCTGGCCTCGGCCGGCGTGATGGACATGTTCCCGCATACCTCCCATGTCGAATCGATTGCGCTGTTCGAGCGCTGA
PROTEIN sequence
Length: 446
MSRSNSVSPTPFEAHITDLGHDGRGVARIDGKTVFVSGALLGERVMAKLRKRHRHFDEAETVEVITASPHRVEPKCRHFAQCSGCSLQHLDAPSQIAAKQRVLAENFERIGKVTPQAWLPPLTAEPWGYRRKGRLSVRNVAKKGRVLVGFREEQNPRFVTEIRQCEVMHPALGPKVGLLAELLGTMDAAEDIPQIEFAAGDELMALVFRHMQPLSEHDQAALVAFGRQHGFAIYLQPGGISSVHPLWPENPRLAFTIASGDARFADVELEFQPLDFVQVNAGMNQLMMARAMELLDPQPADRVLDLFCGLGNFTLPIARRVAEVVGVEGEHGLVERAAQNAARNGIANARFHVANLFEDQRATEWARQPWDKLLLDPPRAGADKVLDYLPHKATRRIVYVSCHPASLARDAGILVNRHGFRLASAGVMDMFPHTSHVESIALFER*