ggKbase home page

scnpilot_solids2_trim150_scaffold_1953

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1953_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..883
DNA (882bp) protein (294aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Rhodanobacter sp. 115 RepID=I4VM51_9GAMM rbh
scnpilot_solids2_trim150_scaffold_1953_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1072..1455
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR85_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89343.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1953_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1459..2118
DNA (660bp) protein (220aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPL9_9GAMM
scnpilot_solids2_trim150_scaffold_1953_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2197..3129
DNA (933bp) protein (311aa)
GTPase Era n=1 Tax=Rhodanobacter denitrificans RepID=I4WR87_9GAMM
GTP-binding protein Era
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1953_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3306..4055
DNA (750bp) protein (250aa)
DNA repair protein RecO n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPM1_9GAMM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA replication and repair protein RecO
scnpilot_solids2_trim150_scaffold_1953_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4226..4978)
DNA (753bp) protein (251aa)
Signal transduction histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR89_9GAMM
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EIM01414.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative two-component hybrid sensor and regulator
scnpilot_solids2_trim150_scaffold_1953_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5003..7036
DNA (2034bp) protein (678aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NEV5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89339.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1953_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7134..7742
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR91_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89338.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1953_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7891..9228
DNA (1338bp) protein (446aa)
23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Rhodanobacter denitrificans RepID=M4NGW6_9GAMM
scnpilot_solids2_trim150_scaffold_1953_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9343..9864
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6R5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95156.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1953_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9858..10871
DNA (1014bp) protein (338aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Beta-hexosaminidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6R6_9GAMM
beta-glucosidase-like glycosyl hydrolase
scnpilot_solids2_trim150_scaffold_1953_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10868..11431
DNA (564bp) protein (188aa)
Hypoxanthine-guanine phosphoribosyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6R7_9GAMM
hypoxanthine-guanine phosphoribosyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1953_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11575..12306
DNA (732bp) protein (244aa)
purine nucleoside phosphorylase (EC:2.4.2.28)
Probable S-methyl-5'-thioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.44 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Purine nucleoside phosphorylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR96_9GAMM
scnpilot_solids2_trim150_scaffold_1953_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12445..12612
DNA (168bp) protein (56aa)
Cold shock protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VM38_9GAMM
Cold shock protein {ECO:0000313|EMBL:EIL88279.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cold shock protein
scnpilot_solids2_trim150_scaffold_1953_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12812..13441
DNA (630bp) protein (210aa)
Putative reductase R2APBS1_2220 {ECO:0000256|HAMAP-Rule:MF_01838}; EC=1.3.1.- {ECO:0000256|HAMAP-Rule:MF_01838};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Putative reductase UUC_09943 n=1 Tax=Rhodanobacter denitrificans RepID=I4WRA0_9GAMM
putative paraquat-inducible protein B
Displaying 15 items

View Taxonomy