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scnpilot_solids2_trim150_scaffold_1071_1

Organism: SCNPILOT_SOLID2_TRIM150_Rhodanobacter_68_151

partial RP 30 / 55 MC: 3 BSCG 33 / 51 MC: 5 ASCG 8 / 38 MC: 1
Location: 68..1066

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 97.6
  • Coverage: 332.0
  • Bit_score: 633
  • Evalue 5.30e-179
  • rbh
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.6
  • Coverage: 332.0
  • Bit_score: 633
  • Evalue 2.40e-178
DNA-directed RNA polymerase subunit alpha n=2 Tax=Rhodanobacter RepID=I4WKT7_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 97.6
  • Coverage: 332.0
  • Bit_score: 633
  • Evalue 1.70e-178
  • rbh

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Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 999
ATGGCAGTTTCGTCAACTAGTGTGCTGCGGCCACGTGGCCTCAGCGTCGAACAGCTCGGAGCCAACCGCGCCAAGGTGGTGGTCGAGCCGCTCGAGCGTGGCTTTGGCCATACCCTGGGCAACGCGCTGCGCCGCGTGCTGCTCTCCTCGATCCCCGGCAGCGCCATCGTCGAGGTGGAAATCGACGGCGTGCTGCACGAATACACCACGCTTGAAGGCCTGCAGGAGGACGTCATCGAAGTCCTGCTGAACCTCAAGGACGTGGCGATCCGGCAGCATTCGGGCGATGAAGTGACCCTGACCTTGTCCAAGAAGGGCAAGGGCGTGGTGACCGCCGGCGACATCGTGGTCGACCATACGGTGGAGATCGTCAACCCCGAGCATGTCCTGTGCCACCTGACCAAGGACATCGCGCTCAACATGCGCCTCAAGGTGCGTCGCGGCGTCGGCTACCAGCCGGCCAGCGCGCGCCAGCATCCTGACGACGAGGCGCGCCCGATCGGCCGCCTGCAGCTGGATGCCTCGTTCGCGCCCGTGTTGCGGGTGGCCTACGAGGTGGACGCCGCGCGTGTCGAGCAGCGCACCAACCTTGACAAGCTGGTGCTGGACATCGAGACCAACGGCACCATCGACGCCGAGGACGCGGTGCGCAAGGCCGCCGAGATCATCAACGACCAGCTGTCGGTGTTCGGTGACTTCTCGCGTCGCGAAAGTGCCACGGACAAGGCCGAGAAGAGCGGCTTCGAGCCGCTGCTGCTGCGTCCGATCGACGATCTGGAGCTGACCGTGCGTTCGGCGAACTGCCTGAAGGCCGAGAGCATCTATTACATCGGCGACCTGGTGCAGAAGACCGAGGTCGAGCTGTTGAAGACGCCGAACCTGGGCAAGAAGTCGCTGACCGAAATCAAGGATGTCCTGGGCGGGCGCAGCCTGTCCCTCGGCACCAAGCTGGAAAACTGGCCGCCGCCGGGGCTTTCGCACGGCATGCAGCTGGGCTAG
PROTEIN sequence
Length: 333
MAVSSTSVLRPRGLSVEQLGANRAKVVVEPLERGFGHTLGNALRRVLLSSIPGSAIVEVEIDGVLHEYTTLEGLQEDVIEVLLNLKDVAIRQHSGDEVTLTLSKKGKGVVTAGDIVVDHTVEIVNPEHVLCHLTKDIALNMRLKVRRGVGYQPASARQHPDDEARPIGRLQLDASFAPVLRVAYEVDAARVEQRTNLDKLVLDIETNGTIDAEDAVRKAAEIINDQLSVFGDFSRRESATDKAEKSGFEPLLLRPIDDLELTVRSANCLKAESIYYIGDLVQKTEVELLKTPNLGKKSLTEIKDVLGGRSLSLGTKLENWPPPGLSHGMQLG*