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scnpilot_solids2_trim150_scaffold_1071

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1071_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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68..1066
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=Rhodanobacter RepID=I4WKT7_9GAMM rbh
scnpilot_solids2_trim150_scaffold_1071_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1271..1654
DNA (384bp) protein (128aa)
50S ribosomal protein L17 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKT8_9GAMM
LSU ribosomal protein L17P
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1071_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1830..2333
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034DF1C2
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
disulfide bond formation protein DsbB
scnpilot_solids2_trim150_scaffold_1071_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2330..3730
DNA (1401bp) protein (467aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WKU0_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1071_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3743..5350)
DNA (1608bp) protein (536aa)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NF09_9GAMM
amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:AGG88163.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1071_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5446..6216
DNA (771bp) protein (257aa)
Cytochrome c553 n=1 Tax=Rhodanobacter denitrificans RepID=M4NC23_9GAMM
cytochrome c553
Cytochrome c553 {ECO:0000313|EMBL:AGG88164.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1071_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6230..6745)
DNA (516bp) protein (172aa)
G:T/U mismatch-specific DNA glycosylase (EC:3.2.2.-)
G:T/U mismatch-specific DNA glycosylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ32_9GAMM
G:T/U mismatch-specific DNA glycosylase {ECO:0000313|EMBL:EIL92473.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_1071_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6729..7421)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ31_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92472.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PP-loop superfamily ATP-utilizing enzyme
scnpilot_solids2_trim150_scaffold_1071_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7585..9084
DNA (1500bp) protein (500aa)
Ribonuclease G n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL36_9GAMM rbh
Ribonuclease G {ECO:0000313|EMBL:EIM00178.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ribonuclease, Rne/Rng family rbh
scnpilot_solids2_trim150_scaffold_1071_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9106..13050
DNA (3945bp) protein (1315aa)
TIGR02099 family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NC28_9GAMM
TIGR02099 family protein
TIGR02099 family protein {ECO:0000313|EMBL:AGG88169.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1071_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13118..14557
DNA (1440bp) protein (480aa)
Putative Zn-dependent protease-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ27_9GAMM rbh
Putative Zn-dependent protease-like protein {ECO:0000313|EMBL:EIL92468.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
microcin-processing peptidase 2 rbh
scnpilot_solids2_trim150_scaffold_1071_12

Not on your lists

14640..14927
DNA (288bp) protein (96aa)
PAAR repeat-containing protein n=1 Tax=mine drainage metagenome RepID=T1AQN3_9ZZZZ
PAAR repeat-containing protein {ECO:0000313|EMBL:EQD44370.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1071_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15006..16385
DNA (1380bp) protein (460aa)
Methyltransferase type 12 n=3 Tax=mine drainage metagenome RepID=T1CJS8_9ZZZZ
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1071_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16498..18459
DNA (1962bp) protein (654aa)
Type VI secretion system Vgr family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T0_9GAMM
Type VI secretion system Vgr family protein {ECO:0000313|EMBL:EIL93071.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1071_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18471..19013
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93072.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1071_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19275..20786
DNA (1512bp) protein (504aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93073.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein; K11894 type VI secretion system protein ImpI
scnpilot_solids2_trim150_scaffold_1071_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20758..26748
DNA (5991bp) protein (1997aa)
Type VI secretion protein IcmF n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T5_9GAMM
Type VI secretion protein IcmF {ECO:0000313|EMBL:EIL93076.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type VI secretion protein IcmF; K11891 type VI secretion system protein ImpL
scnpilot_solids2_trim150_scaffold_1071_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26753..28330
DNA (1578bp) protein (526aa)
Type VI secretion-associated protein, BMA_A0400 family n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T6_9GAMM
Type VI secretion-associated protein, BMA_A0400 family {ECO:0000313|EMBL:EIL93077.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_1071_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28327..29043
DNA (717bp) protein (239aa)
protein serine/threonine phosphatase; K01090 protein phosphatase [EC:3.1.3.16]
Protein phosphatase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T7_9GAMM
Protein phosphatase {ECO:0000313|EMBL:EIL93078.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_1071_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29060..33439
DNA (4380bp) protein (1460aa)
serine/threonine protein kinase; K08282 non-specific serine/threonine protein kinase [EC:2.7.11.1]
Protein kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T8_9GAMM
Protein kinase {ECO:0000313|EMBL:EIL93079.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_1071_21
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33436..33801
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU25_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1071_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34059..35801
DNA (1743bp) protein (581aa)
Hemolysin activator protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0U0_9GAMM
hemolysin activator protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1071_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35817..38540
DNA (2724bp) protein (908aa)
Filamentous hemagglutinin family outer membrane protein (Fragment) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0U1_9GAMM
putative filamentous haemagglutinin
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 23 items

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