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scnpilot_solids2_trim150_scaffold_3222

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3222_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6..269)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM55_9GAMM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SSU ribosomal protein S20P
scnpilot_solids2_trim150_scaffold_3222_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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601..1953
DNA (1353bp) protein (451aa)
Integral membrane protein MviN n=1 Tax=Rhodanobacter denitrificans RepID=I4WTR1_9GAMM
integral membrane protein MviN
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3222_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1987..2937
DNA (951bp) protein (317aa)
FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Riboflavin kinase n=2 Tax=Rhodanobacter denitrificans RepID=M4NKV0_9GAMM
scnpilot_solids2_trim150_scaffold_3222_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3011..5893
DNA (2883bp) protein (961aa)
Isoleucyl-tRNA synthetase (EC:6.1.1.5) rbh
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Isoleucine--tRNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTR3_9GAMM rbh
scnpilot_solids2_trim150_scaffold_3222_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6059..6559
DNA (501bp) protein (167aa)
signal peptidase II (EC:3.4.23.36) rbh
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Lipoprotein signal peptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NFK1_9GAMM rbh
scnpilot_solids2_trim150_scaffold_3222_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6671..7633
DNA (963bp) protein (321aa)
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (EC:1.17.1.2) rbh
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTR5_9GAMM rbh
scnpilot_solids2_trim150_scaffold_3222_trna_1
unknown

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comp(7731..7803)
DNA (73bp)
transferRNA Thr
scnpilot_solids2_trim150_scaffold_3222_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8025..9389
DNA (1365bp) protein (455aa)
Diguanylate cyclase n=2 Tax=Rhodanobacter denitrificans RepID=I4WTR6_9GAMM
diguanylate cyclase (GGDEF) domain-containing protein
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG88395.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3222_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9335..9775
DNA (441bp) protein (147aa)
Diguanylate cyclase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM61_9GAMM
Diguanylate cyclase {ECO:0000313|EMBL:EIM00553.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids2_trim150_scaffold_3222_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10039..10665
DNA (627bp) protein (209aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTR7_9GAMM rbh
prepilin-type N-terminal cleavage/methylation domain-containing protein rbh
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGG88396.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3222_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10662..11162
DNA (501bp) protein (167aa)
Type IV pilus modification protein PilV n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM63_9GAMM
Type IV pilus modification protein PilV {ECO:0000313|EMBL:EIM00555.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
type IV pilus modification protein PilV
scnpilot_solids2_trim150_scaffold_3222_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11159..12217
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM64_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM00556.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
scnpilot_solids2_trim150_scaffold_3222_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12219..12845
DNA (627bp) protein (209aa)
Putative Tfp pilus assembly protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM65_9GAMM
Putative Tfp pilus assembly protein {ECO:0000313|EMBL:EIM00557.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Tfp pilus assembly protein PilX
scnpilot_solids2_trim150_scaffold_3222_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12917..15643
DNA (2727bp) protein (909aa)
Type 4 fimbrial biogenesis protein PilY1 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM66_9GAMM rbh
Type 4 fimbrial biogenesis protein PilY1 {ECO:0000313|EMBL:EIM00558.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Tfp pilus assembly protein, tip-associated adhesin PilY1
scnpilot_solids2_trim150_scaffold_3222_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15619..16533
DNA (915bp) protein (305aa)
Type 4 fimbrial biogenesis protein PilY1 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM66_9GAMM
Type 4 fimbrial biogenesis protein PilY1 {ECO:0000313|EMBL:EIM00558.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Tfp pilus assembly protein, tip-associated adhesin PilY1
scnpilot_solids2_trim150_scaffold_3222_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16546..16992
DNA (447bp) protein (149aa)
PilE protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM67_9GAMM
PilE protein {ECO:0000313|EMBL:EIM00559.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
scnpilot_solids2_trim150_scaffold_3222_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17060..18895)
DNA (1836bp) protein (612aa)
RecBCD enzyme subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01487};; Exonuclease V subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; Helicase/nuclease RecBCD subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA helicase/exodeoxyribonuclease V, alpha subunit (EC:3.1.11.5) rbh
DNA helicase/exodeoxyribonuclease V, alpha subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NEM1_9GAMM rbh
scnpilot_solids2_trim150_scaffold_3222_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18892..20496)
DNA (1605bp) protein (535aa)
RecBCD enzyme subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01485};; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; Exonuclease V subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; Helicase/nuclease RecBCD subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing n=1 Tax=Rhodanobacter denitrificans RepID=M4NFL1_9GAMM
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing
Displaying 18 items

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