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scnpilot_solids2_trim150_scaffold_3768

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3768_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..400
DNA (399bp) protein (133aa)
Magnesium transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WS81_9GAMM
Mg2+ transporter MgtE
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3768_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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452..1462
DNA (1011bp) protein (337aa)
tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylate synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA-uridine isomerase D {ECO:0000256|HAMAP-Rule:MF_01082}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA pseudouridine synthase D n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPH9_9GAMM
tRNA pseudouridine synthase, TruD family
scnpilot_solids2_trim150_scaffold_3768_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1609..2154)
DNA (546bp) protein (182aa)
Smr domain protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR48_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89380.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3768_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2307..3044
DNA (738bp) protein (246aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
5'-nucleotidase SurE n=1 Tax=Rhodanobacter denitrificans RepID=M4NEZ4_9GAMM
5'/3'-nucleotidase SurE
scnpilot_solids2_trim150_scaffold_3768_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3048..3743
DNA (696bp) protein (232aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathip
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW96_9GAMM
protein-L-isoaspartate and D-aspartate O-methyltransferase
scnpilot_solids2_trim150_scaffold_3768_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3743..4351
DNA (609bp) protein (203aa)
Putative membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NH07_9GAMM rbh
hypothetical protein rbh
Putative membrane protein {ECO:0000313|EMBL:AGG89377.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3768_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4378..5376
DNA (999bp) protein (333aa)
Metalloendopeptidase-like membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NNY3_9GAMM rbh
metalloendopeptidase-like membrane protein rbh
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:AGG89376.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3768_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5390..5767)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NET7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89375.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3768_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5767..6063)
DNA (297bp) protein (99aa)
Putative RNA-binding protein containing KH domain, possibly ribosomal protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR54_9GAMM
putative RNA-binding protein, YhbY family
Putative RNA-binding protein, YhbY family {ECO:0000313|EMBL:AGG89374.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3768_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6145..6798
DNA (654bp) protein (218aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
23S rRNA methylase (EC:2.1.1.-)
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPI8_9GAMM
scnpilot_solids2_trim150_scaffold_3768_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6791..8749
DNA (1959bp) protein (653aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
membrane protease FtsH catalytic subunit (EC:3.4.24.-) rbh
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Rhodanobacter denitrificans RepID=M4NGZ8_9GAMM rbh
scnpilot_solids2_trim150_scaffold_3768_trna_1
unknown

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9019..9092
DNA (74bp)
transferRNA Arg
Displaying 12 items

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