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scnpilot_solids2_trim150_scaffold_2013

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2013_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..1480
DNA (1479bp) protein (493aa)
methionine synthase (B12-dependent) (EC:2.1.1.13)
Methionine synthase (B12-dependent) {ECO:0000313|EMBL:AGG88414.1}; EC=2.1.1.13 {ECO:0000313|EMBL:AGG88414.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Methionine synthase (B12-dependent) n=1 Tax=Rhodanobacter denitrificans RepID=M4NCN2_9GAMM
scnpilot_solids2_trim150_scaffold_2013_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1580..1921)
DNA (342bp) protein (114aa)
Putative membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WL73_9GAMM
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGG88413.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2013_trna_1
unknown

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2046..2117
DNA (72bp)
transferRNA Val
scnpilot_solids2_trim150_scaffold_2013_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2372..6160)
DNA (3789bp) protein (1263aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTS8_9GAMM rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG88407.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
diguanylate cyclase (GGDEF) domain-containing protein rbh
scnpilot_solids2_trim150_scaffold_2013_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6218..7495)
DNA (1278bp) protein (426aa)
ECF subfamily RNA polymerase sigma factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WTS7_9GAMM rbh
RNA polymerase, sigma subunit, ECF family rbh
RNA polymerase, sigma subunit, ECF family {ECO:0000313|EMBL:AGG88406.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2013_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7622..8041)
DNA (420bp) protein (140aa)
DGPFAETKE family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM71_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2013_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8191..11649
DNA (3459bp) protein (1153aa)
RecBCD enzyme subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01486};; Exonuclease V subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; Helicase/nuclease RecBCD subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA helicase/exodeoxyribonuclease V, gamma subunit (EC:3.1.11.5) rbh
Exodeoxyribonuclease V subunit gamma n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM70_9GAMM
scnpilot_solids2_trim150_scaffold_2013_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11863..13641
DNA (1779bp) protein (593aa)
RecBCD enzyme subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01485};; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; Exonuclease V subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; Helicase/nuclease RecBCD subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Exodeoxyribonuclease V subunit beta n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM69_9GAMM
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing
Displaying 8 items

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