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scnpilot_solids2_trim150_scaffold_2021

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2021_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..134)
DNA (132bp) protein (44aa)
uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W969_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2021_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(243..599)
DNA (357bp) protein (119aa)
Phosphate starvation-inducible protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WNR6_9GAMM
psiF repeat protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2021_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(754..2250)
DNA (1497bp) protein (499aa)
ornithine/acetylornithine aminotransferase (EC:2.6.1.36) rbh
Ornithine/acetylornithine aminotransferase {ECO:0000313|EMBL:AGG88216.1}; EC=2.6.1.36 {ECO:0000313|EMBL:AGG88216.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ornithine/acetylornithine aminotransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NKA9_9GAMM rbh
scnpilot_solids2_trim150_scaffold_2021_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2543..3472
DNA (930bp) protein (310aa)
Putative ATP binding component of ABC transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WNR8_9GAMM rbh
ABC-type multidrug transport system, ATPase component rbh
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:AGG88217.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2021_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3474..4265
DNA (792bp) protein (264aa)
ABC transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEG1_9GAMM
ABC transporter {ECO:0000313|EMBL:EIL97852.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ABC-type multidrug transport system, permease component
scnpilot_solids2_trim150_scaffold_2021_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4310..5539
DNA (1230bp) protein (410aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEG0_9GAMM
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EIL97851.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_2021_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5536..6138
DNA (603bp) protein (201aa)
LuxR family two-component response regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEF9_9GAMM
LuxR family two-component response regulator {ECO:0000313|EMBL:EIL97850.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
scnpilot_solids2_trim150_scaffold_2021_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6203..7234
DNA (1032bp) protein (344aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WNS2_9GAMM rbh
S-adenosylmethionine:tRNA ribosyltransferase-isomerase rbh
scnpilot_solids2_trim150_scaffold_2021_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7373..8536
DNA (1164bp) protein (388aa)
tRNA-guanine transglycosylase (EC:2.4.2.29) rbh
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Queuine tRNA-ribosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NE69_9GAMM rbh
scnpilot_solids2_trim150_scaffold_2021_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8695..9027
DNA (333bp) protein (111aa)
Preprotein translocase subunit YajC n=1 Tax=Rhodanobacter denitrificans RepID=I4WNS4_9GAMM
preprotein translocase, YajC subunit
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:AGG88223.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2021_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9186..11069
DNA (1884bp) protein (628aa)
Protein translocase subunit SecD n=1 Tax=Rhodanobacter denitrificans RepID=I4WNS5_9GAMM rbh
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
protein-export membrane protein, SecD/SecF family rbh
scnpilot_solids2_trim150_scaffold_2021_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11079..11735
DNA (657bp) protein (219aa)
Protein-export membrane protein SecF n=1 Tax=Rhodanobacter denitrificans RepID=I4WNS6_9GAMM
protein translocase subunit secF
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 12 items

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