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scnpilot_solids2_trim150_scaffold_5126

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_5126_1
unknown

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comp(2..85)
DNA (84bp) protein (28aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_5126_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(82..858)
DNA (777bp) protein (259aa)
Cytochrome c n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCD6_9GAMM
Cytochrome c {ECO:0000313|EMBL:EIL97127.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cytochrome c553 rbh
scnpilot_solids2_trim150_scaffold_5126_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1236..2387
DNA (1152bp) protein (384aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCD7_9GAMM
scnpilot_solids2_trim150_scaffold_5126_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2384..3379
DNA (996bp) protein (332aa)
homoserine kinase (EC:2.7.1.39) rbh
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Homoserine kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NM15_9GAMM rbh
scnpilot_solids2_trim150_scaffold_5126_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3376..4881
DNA (1506bp) protein (502aa)
Threonine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIH9_9GAMM
threonine synthase
Threonine synthase {ECO:0000313|EMBL:AGG90709.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_5126_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5026..6654
DNA (1629bp) protein (543aa)
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WK99_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_5126_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6651..7583
DNA (933bp) protein (311aa)
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched chain amino acid aminotransferase apoenzyme {ECO:0000313|EMBL:AGG90712.1}; EC=2.6.1.42 {ECO:0000313|EMBL:AGG90712.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Branched-chain amino acid aminotransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WK98_9GAMM
scnpilot_solids2_trim150_scaffold_5126_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7580..7909
DNA (330bp) protein (110aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WK97_9GAMM
3-isopropylmalate dehydratase, large subunit
Displaying 8 items

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