ggKbase home page

scnpilot_solids2_trim150_scaffold_461

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_461_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..425)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367097D
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_461_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(425..1150)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000374CB65 rbh
hypothetical protein; K12066 conjugal transfer pilus assembly protein TraK
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_461_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1113..1703)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003711550 rbh
type IV conjugative transfer system protein TraE; K12067 conjugal transfer pilus assembly protein TraE
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_461_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1703..1993)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BB3F6
protein TraL; K12068 conjugal transfer pilus assembly protein TraL
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_461_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2019..2336)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E0D72
TraA protein; K12069 conjugal transfer pilus assembly protein TraA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_461_6
unknown

Not on your lists

comp(2374..2613)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379F8B0
scnpilot_solids2_trim150_scaffold_461_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3141..3398)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379B5D5
lytic transglycosylase catalytic subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
scnpilot_solids2_trim150_scaffold_461_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4501..5979
DNA (1479bp) protein (493aa)
sulfate transporter n=1 Tax=Pseudomonas aeruginosa RepID=UPI0003AC95EF rbh
sulfate permease rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_461_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5992..6843
DNA (852bp) protein (284aa)
Putative UspA universal stress protein n=1 Tax=Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A) RepID=F2N4V7_PSEU6 rbh
putative UspA universal stress protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_461_10
unknown

Not on your lists

6905..7021
DNA (117bp) protein (39aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_461_11
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7052..8395)
DNA (1344bp) protein (448aa)
two component, sigma54 specific, transcriptional regulator, Fis family id=12498611 bin=THIO_MID species=Thioalkalimicrobium cyclicum genus=Thioalkalimicrobium taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
two component, sigma54 specific, transcriptional regulator, Fis family rbh
Tax=CG_Thiomicrospira_01
scnpilot_solids2_trim150_scaffold_461_12
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8392..9738)
DNA (1347bp) protein (449aa)
integral membrane sensor signal transduction histidine kinase id=12498610 bin=THIO_MID species=Thiomicrospira halophila genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
integral membrane sensor signal transduction histidine kinase
Tax=CG_Thiomicrospira_01
scnpilot_solids2_trim150_scaffold_461_13
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9735..10553)
DNA (819bp) protein (273aa)
phosphonate ABC transporter, periplasmic phosphonate-binding protein; K02044 phosphonate transport system substrate-binding protein id=12498609 bin=THIO_MID species=Thiomicrospira halophila genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
phosphonate ABC transporter, periplasmic phosphonate-binding protein; K02044 phosphonate transport system substrate-binding protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
scnpilot_solids2_trim150_scaffold_461_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10849..11163)
DNA (315bp) protein (105aa)
sulfur compound chelating protein SoxZ id=12498608 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sulfur compound chelating protein SoxZ
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids2_trim150_scaffold_461_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11215..11682)
DNA (468bp) protein (156aa)
sulfur oxidation protein SoxY n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EF751
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids2_trim150_scaffold_461_16
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11750..12382)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI00036A5C46
Sulfur oxidation protein SoxX {ECO:0000313|EMBL:EJW10472.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_461_17
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12397..13212)
DNA (816bp) protein (272aa)
SoxAX cytochrome complex subunit A {ECO:0000256|PIRNR:PIRNR038455}; EC=1.8.2.- {ECO:0000256|PIRNR:PIRNR038455};; Protein SoxA {ECO:0000256|PIRNR:PIRNR038455}; Sulfur oxidizing protein A {ECO:0000256|PIRNR:PIRNR038455}; Thiosulfate-oxidizing multienzyme system protein SoxA {ECO:0000256|PIRNR:PIRNR038455}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein id=12498605 bin=THIO_MID species=Thiothrix disciformis genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein
scnpilot_solids2_trim150_scaffold_461_18
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13499..14233)
DNA (735bp) protein (245aa)
Zinc/iron permease n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C4M6_NITHN rbh
zinc/iron permease; K07238 zinc transporter, ZIP family rbh
Zinc/iron permease {ECO:0000313|EMBL:ADE15210.1}; Flags: Precursor;; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
scnpilot_solids2_trim150_scaffold_461_19
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14239..15174)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000371B12F rbh
putative FeS assembly protein SufBD rbh
Putative FeS assembly protein SufBD {ECO:0000313|EMBL:BAN36883.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
scnpilot_solids2_trim150_scaffold_461_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15167..15877)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00036CCAAC
putative FeS assembly ATPase SufC
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
scnpilot_solids2_trim150_scaffold_461_21
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15893..16417)
DNA (525bp) protein (175aa)
arsC; protein tyrosine phosphatase (EC:1.2.4.- 3.1.3.48)
Protein tyrosine phosphatase {ECO:0000313|EMBL:BAN36906.1}; EC=1.2.4.- {ECO:0000313|EMBL:BAN36906.1};; EC=3.1.3.48 {ECO:0000313|EMBL:BAN36906.1};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Protein tyrosine phosphatase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AKH6_9PROT
scnpilot_solids2_trim150_scaffold_461_22
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16483..16815)
DNA (333bp) protein (111aa)
membrane protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00037678CB
hypothetical protein; K09771 hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
scnpilot_solids2_trim150_scaffold_461_23
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16881..17600)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6APK2_9PROT rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAN36864.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
scnpilot_solids2_trim150_scaffold_461_24
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17613..18509)
DNA (897bp) protein (299aa)
Cation diffusion facilitator family transporter n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B984_9PROT rbh
cation diffusion facilitator family transporter rbh
Tax=CG_Hydro_01
scnpilot_solids2_trim150_scaffold_461_25
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18512..18796)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABM9_9PROT
hypothetical protein
Tax=CG_Hydro_01
scnpilot_solids2_trim150_scaffold_461_26
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18801..19412)
DNA (612bp) protein (204aa)
Formylmethanofuran dehydrogenase subunit E n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AE29_9PROT rbh
formylmethanofuran dehydrogenase subunit E rbh
Formylmethanofuran dehydrogenase subunit E {ECO:0000313|EMBL:BAN36888.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
scnpilot_solids2_trim150_scaffold_461_27
RIFOXYD12_FULL_Elusimicrobia_66_9_curated, Elusimicrobia, Bacteria

Not on your lists

comp(19409..19672)
DNA (264bp) protein (88aa)
thiol-disulfide isomerase/thioredoxin id=12498542 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thiol-disulfide isomerase/thioredoxin
Tax=RIFOXYD12_FULL_Elusimicrobia_66_9_curated
scnpilot_solids2_trim150_scaffold_461_28
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19676..20443)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6APM2_9PROT rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAN36889.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
scnpilot_solids2_trim150_scaffold_461_29
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20706..21119)
DNA (414bp) protein (138aa)
redox protein, regulator of disulfide bond formation id=12498540 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
redox protein, regulator of disulfide bond formation
Redox protein, regulator of disulfide bond formation {ECO:0000313|EMBL:BAN36890.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
scnpilot_solids2_trim150_scaffold_461_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21146..21379)
DNA (234bp) protein (78aa)
thiol-disulfide isomerase/thioredoxin id=12498597 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thiol-disulfide isomerase/thioredoxin
Thiol-disulfide isomerase/thioredoxin {ECO:0000313|EMBL:AAZ97382.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 46 in total

View Taxonomy