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scnpilot_solids2_trim150_scaffold_3321

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3321_1
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..442
DNA (441bp) protein (147aa)
Transposase Tn1721 n=1 Tax=Pseudomonas aeruginosa DHS01 RepID=V4ZB66_PSEAI
transposase
Tn4653 transposase {ECO:0000313|EMBL:CAC86846.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
scnpilot_solids2_trim150_scaffold_3321_2

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comp(633..1856)
DNA (1224bp) protein (408aa)
Replication initiation protein n=1 Tax=uncultured bacterium RepID=J9RT84_9BACT rbh
Replication initiation protein {ECO:0000313|EMBL:AFR43728.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TrfA family protein rbh
scnpilot_solids2_trim150_scaffold_3321_3

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comp(1904..2242)
DNA (339bp) protein (113aa)
Single-stranded DNA-binding protein n=2 Tax=Bacteria RepID=A1WDQ0_ACISJ
single-strand binding protein; K03111 single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_solids2_trim150_scaffold_3321_4
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2996..3961
DNA (966bp) protein (322aa)
Type II secretion system protein E n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDP8_ACISJ rbh
conjugal transfer ATPase TrbB; K03196 type IV secretion system protein VirB11 rbh
Type II secretion system protein E {ECO:0000313|EMBL:ABM44373.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids2_trim150_scaffold_3321_5

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3974..4438
DNA (465bp) protein (155aa)
Conjugal transfer protein TrbC n=2 Tax=Bacteria RepID=A1WDP7_ACISJ rbh
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2 rbh
Conjugative transfer protein {ECO:0000313|EMBL:AFV47182.1}; TrbC conjugal transfer protein {ECO:0000313|EMBL:CAG26000.1}; Flags: Precursor;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_solids2_trim150_scaffold_3321_6
Mycobacterium abscessus, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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4442..4753
DNA (312bp) protein (104aa)
Conjugal transfer TrbD family protein n=19 Tax=Bacteria RepID=A1WDP6_ACISJ
conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
TrbD {ECO:0000313|EMBL:AFJ38119.1}; TaxID=1168066 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium abscessus.;" source="Mycobacterium abscessus subsp. bolletii F1725.;"
scnpilot_solids2_trim150_scaffold_3321_7
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4750..7308
DNA (2559bp) protein (853aa)
Type IV secretion/conjugal transfer ATPase, VirB4 family n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDP5_ACISJ rbh
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4 rbh
Type IV secretion/conjugal transfer ATPase, VirB4 family {ECO:0000313|EMBL:ABM44370.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids2_trim150_scaffold_3321_8
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7305..8087
DNA (783bp) protein (261aa)
Conjugal transfer protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDP4_ACISJ rbh
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
Conjugal transfer protein {ECO:0000313|EMBL:ABM44369.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids2_trim150_scaffold_3321_9

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8105..9004
DNA (900bp) protein (300aa)
Conjugal transfer protein TrbG/VirB9/CagX n=2 Tax=Bacteria RepID=A1WDP3_ACISJ rbh
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9 rbh
TrbG {ECO:0000313|EMBL:AEV56648.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_solids2_trim150_scaffold_3321_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9007..9495
DNA (489bp) protein (163aa)
Conjugal transfer TrbH family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDP2_ACISJ rbh
conjugal transfer protein TrbH rbh
Conjugal transfer TrbH family protein {ECO:0000313|EMBL:ABM44367.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids2_trim150_scaffold_3321_11
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9500..9901
DNA (402bp) protein (134aa)
TrbI n=1 Tax=Bordetella pertussis RepID=Q08KZ4_BORPT
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
TrbI {ECO:0000313|EMBL:BAF33464.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
scnpilot_solids2_trim150_scaffold_3321_12
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9840..10745
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW38_ACCPU rbh
Conjugation TrbI family protein {ECO:0000313|EMBL:ABM44366.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10 rbh
scnpilot_solids2_trim150_scaffold_3321_13
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10763..11608
DNA (846bp) protein (282aa)
TrbJ protein of DNA transfer system n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDP0_ACISJ rbh
conjugal transfer protein TrbJ rbh
TrbJ protein of DNA transfer system {ECO:0000313|EMBL:ABM44365.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids2_trim150_scaffold_3321_14
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11548..11733
DNA (186bp) protein (62aa)
Conjugative transfer entry exclusion protein n=1 Tax=uncultured bacterium RepID=Q5W3J3_9BACT
entry exclusion protein TrbK
Entry exclusion protein TrbK {ECO:0000313|EMBL:ABM44364.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids2_trim150_scaffold_3321_15
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11744..13477
DNA (1734bp) protein (578aa)
TrbL/VirB6 plasmid conjugal transfer protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDN8_ACISJ rbh
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:ABM44363.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
TrbL/VirB6 plasmid conjugal transfer protein; K03201 type IV secretion system protein VirB6 rbh
scnpilot_solids2_trim150_scaffold_3321_16
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13494..14078
DNA (585bp) protein (195aa)
TrbM family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDN7_ACISJ rbh
conjugal transfer protein TrbM rbh
TrbM family protein {ECO:0000313|EMBL:ABM44362.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Displaying 16 items

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