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scnpilot_solids2_trim150_scaffold_63_curated

Search features with annotation key words

Displaying items 1-30 of 195 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_63_curated_1
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(456..1457)
DNA (1002bp) protein (334aa)
FAD-binding protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RBC3_9ACTO
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR61999.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
putative siderophore-interacting protein
scnpilot_solids2_trim150_scaffold_63_curated_2
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1450..3582)
DNA (2133bp) protein (711aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BCG2_SANKS
Fe3+-siderophore ABC transporter permease; K02015 iron complex transport system permease protein
ABC-type Fe3+-siderophore transport system, permease component {ECO:0000313|EMBL:ACZ22949.1}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
scnpilot_solids2_trim150_scaffold_63_curated_3
Amycolatopsis orientalis, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3638..4768)
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI000379C032
iron complex transport system substrate-binding protein
Iron complex transport system substrate-binding protein {ECO:0000313|EMBL:AGM03940.1}; TaxID=1156913 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis orientalis HCCB10007.;"
scnpilot_solids2_trim150_scaffold_63_curated_4
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4870..5874)
DNA (1005bp) protein (335aa)
Putative Fe3+-siderophore ABC transporter, ATPase component n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5BCI5_9MICO
fhuC; putative Fe3+-siderophore ABC transporter, ATPase component
Putative Fe3+-siderophore ABC transporter, ATPase component {ECO:0000313|EMBL:CCE74062.1}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
scnpilot_solids2_trim150_scaffold_63_curated_5
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6753..7499)
DNA (747bp) protein (249aa)
Transcriptional regulator, TrmB domain protein n=1 Tax=Mycobacterium smegmatis MKD8 RepID=L8F6J3_MYCSM
Sugar-specific transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:AIY16182.2}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
scnpilot_solids2_trim150_scaffold_63_curated_6
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7703..8812
DNA (1110bp) protein (370aa)
Nitrilase {ECO:0000313|EMBL:AIY16181.1}; EC=3.5.5.7 {ECO:0000313|EMBL:AIY16181.1};; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
Nitrilase n=1 Tax=Mycobacterium smegmatis MKD8 RepID=L8F663_MYCSM
amidohydrolase
scnpilot_solids2_trim150_scaffold_63_curated_7
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8881..9735
DNA (855bp) protein (285aa)
Dihydrolipoamide S-acetyltransferase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KZM2_THERP
dihydrolipoamide S-acetyltransferase; K06889
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
scnpilot_solids2_trim150_scaffold_63_curated_8
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9749..11134
DNA (1386bp) protein (462aa)
MFS transporter n=1 Tax=Amycolatopsis balhimycina RepID=UPI000371C7F2
Nitrate/nitrite transporter {ECO:0000313|EMBL:CEL14785.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
MFS transporter
scnpilot_solids2_trim150_scaffold_63_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11166..12188
DNA (1023bp) protein (341aa)
molybdenum-binding oxidoreductase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035FA92B
putative molybdenum-binding oxidoreductase
Putative molybdenum-binding oxidoreductase {ECO:0000313|EMBL:CAK02878.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
scnpilot_solids2_trim150_scaffold_63_curated_10
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12673..12918)
DNA (246bp) protein (82aa)
Ankyrin repeat protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TIZ2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJK13097.1}; TaxID=1619947 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_63_curated_11
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13360..13848
DNA (489bp) protein (163aa)
LuxR family transcriptional regulator n=1 Tax=Agromyces italicus RepID=UPI0003B38CA1
LuxR family transcriptional regulator {ECO:0000313|EMBL:KJK13079.1}; TaxID=1619947 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
LuxR family two component transcriptional regulator
scnpilot_solids2_trim150_scaffold_63_curated_12
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13900..14580)
DNA (681bp) protein (227aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Micromonospora sp. (strain L5) RepID=E8RW57_MICSL
winged helix family two component transcriptional regulator; K07667 two-component system, OmpR family, KDP operon response regulator KdpE
Response regulator receiver {ECO:0000313|EMBL:ADL44166.1}; TaxID=644283 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
scnpilot_solids2_trim150_scaffold_63_curated_13
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14609..17146)
DNA (2538bp) protein (846aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
osmosensitive k channel signal transduction histidine kinase; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
sensor histidine kinase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5848A
scnpilot_solids2_trim150_scaffold_63_curated_14
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17506..17595
DNA (90bp) protein (30aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
potassium ABC transporter ATPase; K01546 K+-transporting ATPase ATPase A chain [EC:3.6.3.12]
ATPase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B3022B
scnpilot_solids2_trim150_scaffold_63_curated_15
unknown

Not on your lists

17595..19256
DNA (1662bp) protein (554aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_63_curated_16
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19256..21427
DNA (2172bp) protein (724aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
potassium ABC transporter ATPase; K01547 K+-transporting ATPase ATPase B chain [EC:3.6.3.12]
potassium-transporting ATPase subunit B n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B3DB4C
scnpilot_solids2_trim150_scaffold_63_curated_17
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21433..22320
DNA (888bp) protein (296aa)
kdpC; P-type ATPase subunit high-affinity potassium transport system subunit C (EC:3.6.3.12); K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12]
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276, ECO:0000313|EMBL:CAJ63933.1};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14
K transporting ATPase KdpC subunit n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B43D1D
scnpilot_solids2_trim150_scaffold_63_curated_18
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22308..23618)
DNA (1311bp) protein (437aa)
Major facilitator superfamily MFS_1 n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C2N5_BEUC1
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACQ79721.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
scnpilot_solids2_trim150_scaffold_63_curated_19
Streptomyces nodosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23611..24801)
DNA (1191bp) protein (397aa)
N-isopropylammelide isopropylaminohydrolase (EC:3.5.99.4)
N-isopropylammelide isopropylaminohydrolase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C2M3_BEUC1
Cytosine deaminase {ECO:0000313|EMBL:AJE43744.1}; TaxID=40318 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces nodosus.;"
scnpilot_solids2_trim150_scaffold_63_curated_20
Streptomyces mutabilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24854..25477)
DNA (624bp) protein (208aa)
Transcriptional regulator n=1 Tax=Streptomyces coelicoflavus ZG0656 RepID=H1QLR5_9ACTO
Transcriptional regulator {ECO:0000313|EMBL:KFG77291.1}; TaxID=67332 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mutabilis.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_63_curated_21
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(25566..26501)
DNA (936bp) protein (312aa)
Magnesium and cobalt transport protein CorA n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F5P4_CONWI
magnesium and cobalt transporter CorA; K03284 magnesium transporter
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids2_trim150_scaffold_63_curated_22
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26710..27165
DNA (456bp) protein (152aa)
Putative nitrate reductase (NapA) {ECO:0000313|EMBL:CCH79651.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CCH79651.1};; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
molybdopterin oxidoreductase n=1 Tax=Humibacter albus RepID=UPI0003B68BB2
molybdopterin oxidoreductase
scnpilot_solids2_trim150_scaffold_63_curated_23
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27279..27782
DNA (504bp) protein (168aa)
Secreted protein n=1 Tax=Actinoplanes sp. N902-109 RepID=R4LPK9_9ACTO
secreted protein
Secreted protein {ECO:0000313|EMBL:AGL17190.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
scnpilot_solids2_trim150_scaffold_63_curated_24
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27821..28564)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI000379BDAD
Uncharacterized protein {ECO:0000313|EMBL:CDJ99910.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
scnpilot_solids2_trim150_scaffold_63_curated_25
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28773..29204)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XI66_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV78435.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_63_curated_26
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29451..32294
DNA (2844bp) protein (948aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
aceE; pyruvate dehydrogenase subunit E1; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XI65_NAKMY
scnpilot_solids2_trim150_scaffold_63_curated_27
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32432..32932
DNA (501bp) protein (167aa)
Potassium transporter TrkA n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2P9F0_9ACTO
Potassium transporter TrkA {ECO:0000313|EMBL:ETK34103.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
TrkA-C domain-containing protein; K07228 TrkA domain protein
scnpilot_solids2_trim150_scaffold_63_curated_28
Streptomyces aurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33005..34237
DNA (1233bp) protein (411aa)
potassium transporter n=1 Tax=Streptomyces sp. CNT372 RepID=UPI0003676F10
Putative K(+)/H(+) antiporter YhaU {ECO:0000313|EMBL:EPH43952.1}; TaxID=1286094 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces aurantiacus JA 4570.;"
putative sodium/proton antiporter; K03455 monovalent cation:H+ antiporter-2, CPA2 family
scnpilot_solids2_trim150_scaffold_63_curated_29
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34454..34657
DNA (204bp) protein (68aa)
Cold-shock DNA-binding domain protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XI64_NAKMY
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:ACV78433.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_63_curated_30
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34740..35912
DNA (1173bp) protein (391aa)
Putative transcriptional regulator, PucR family n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XI63_NAKMY
PucR family transcriptional regulator
Putative transcriptional regulator, PucR family {ECO:0000313|EMBL:ACV78432.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Displaying items 1-30 of 195 in total

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