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scnpilot_solids2_trim150_scaffold_660_curated_6

Organism: solids_Actinobacteria_2

near complete RP 45 / 55 MC: 2 BSCG 45 / 51 MC: 1 ASCG 10 / 38
Location: comp(5372..6364)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase ECF-subfamily sigma factor n=1 Tax=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) RepID=Q82PJ3_STRAW similarity UNIREF
DB: UNIREF100
  • Identity: 70.0
  • Coverage: 310.0
  • Bit_score: 433
  • Evalue 2.50e-118
sig11; ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 70.0
  • Coverage: 310.0
  • Bit_score: 433
  • Evalue 8.00e-119
RNA polymerase sigma24 factor {ECO:0000313|EMBL:KEP23753.1}; TaxID=1497974 species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.0
  • Coverage: 314.0
  • Bit_score: 433
  • Evalue 2.70e-118

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Taxonomy

Georgenia sp. SUBG003 → Georgenia → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 993
ATGACTGGCATGACCCGGGCCAGCGGCGACACCGAAGAGTTCAGGCGGCTGCAGCCGCTCTTGTTCTCCATCGCCTACCGCATGCTGGGCACCGTCAGCGAGGCGGAAGACGCGGTGGGCGAGGCATGGCTGCGGTATCAGGGCTACCGTGCCTCGAACCCGGAGCCGGCTTCGCCCAAGGCATTCTTGTCGGCGGTGGTGACGCGCATCTGCATCGACGTGCTGCGCTCCGCGCGGGTGCGGCGCGAGGCGTACACCGGCAGTTGGTTCCCCGAGCCCATTGTGGAAGACCCGTACTCCGATCCCGCGCGCACCGCGGAGCTGGCCGACTCCCTGTCCACGGCCTCGCTGTTGTTGCTGGAGCGGCTCAGCCCGGCCGAGCGGGCGGTGTTCGTGCTGCGCGAGGTGTTCGCCTTCGACTTCGCCGAGATCTCTTCCGCGGTGGGCCGTTCCGAGGTGGCGTGCCGGCAGCTCGCGGTCCGGGCGCGGGCGCATATGGCCGCGGGCCGGCCCCGCTTCGAGGCGGATCGTCGAGAACGAGAGCGCCTGGCGACCAGCTTCTTCGACGCCCTGACCGACGGTGACGTGGAGGGCCTGCGAGAGCTGCTCGCCAGCGACGTGCTGATGGTCGGCGACAGTGGCGGGAAGGCACCGCTGTGGGGTCGTGGGATCGCCGGAGCGCCGAACGTCTGCCGGGTATTGGTCTCCCTGTTCCCCGCATTCGCGCGGCTGGGCGGCACCGTGCAGCGGCAGGAGCTGAACGGCCAACCGGGGGCCATCTTCCGGGACCGAGACGGAAGGATCATCAACACCTGGACGATCGACGTCGCGGACGGGCAGATTCAGGCGATCCGGGCCATGCTCAATCCCGACAAGCTGGCGCACCTCGGCCCGGTGGCGGACGCCTGGGCGGTGCTGCGCGAGGTGCAGCTGACCCGCCTGCCGGGCGACCGGCCCGAGCACGAACGCCTCGGCGGCGGTGGGGCACACTGA
PROTEIN sequence
Length: 331
MTGMTRASGDTEEFRRLQPLLFSIAYRMLGTVSEAEDAVGEAWLRYQGYRASNPEPASPKAFLSAVVTRICIDVLRSARVRREAYTGSWFPEPIVEDPYSDPARTAELADSLSTASLLLLERLSPAERAVFVLREVFAFDFAEISSAVGRSEVACRQLAVRARAHMAAGRPRFEADRRERERLATSFFDALTDGDVEGLRELLASDVLMVGDSGGKAPLWGRGIAGAPNVCRVLVSLFPAFARLGGTVQRQELNGQPGAIFRDRDGRIINTWTIDVADGQIQAIRAMLNPDKLAHLGPVADAWAVLREVQLTRLPGDRPEHERLGGGGAH*