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scnpilot_solids2_trim150_scaffold_2004_curated_10

Organism: solids_Actinobacteria_3

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 ASCG 9 / 38
Location: comp(7058..7561)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SDU3_GEOOG similarity UNIREF
DB: UNIREF100
  • Identity: 58.7
  • Coverage: 167.0
  • Bit_score: 199
  • Evalue 3.10e-48
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 58.7
  • Coverage: 167.0
  • Bit_score: 199
  • Evalue 9.80e-49
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.7
  • Coverage: 167.0
  • Bit_score: 199
  • Evalue 4.40e-48

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Taxonomy

Geodermatophilus obscurus → Geodermatophilus → Geodermatophilales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 504
ATGGGGGCGCTGACCCGCGAGCGGGACGTGCGCGAGGCCTACGCCGCGCACTCGGGGGAGCTCTACGGCTTCGCGGTGCGCTCGCTGGGAGACGCGGGGCTCGCCGAGGAGGCCGTCCAGGAGACGTTCCTGCGCGCCTGGAAAGCGGGCGACCGCTTCGATCCCGAGATCGGCAGCCTGCGGACGTGGCTCTTCGCGATCCTGCGCAACGTGGTGATCGACCTGGGGCGAGCGCGGGCGGCGCGGCCGCGGGTGGCCGAGGGCGGCGTCGAGCCGTCGGTCGAACCGCTGGAGCAGGCGCTCCTGGCCTGGCAGGTCGAGGAGGCGATGCGGCGGATCGGCGAGGATCATCGGCGGGTGCTGCTGGAGACCCACTTCCGCGCCCGTCCCTACTCCGAGGTCGCCGAGGAACTGGGCGTGCCGGAGGGGACGATCAAGAGCCGCGTCTACTACGGGCTGCGGGCGCTGCGGGTCGCCTTGGAGGAGATGGGCTATGAGGACTGA
PROTEIN sequence
Length: 168
MGALTRERDVREAYAAHSGELYGFAVRSLGDAGLAEEAVQETFLRAWKAGDRFDPEIGSLRTWLFAILRNVVIDLGRARAARPRVAEGGVEPSVEPLEQALLAWQVEEAMRRIGEDHRRVLLETHFRARPYSEVAEELGVPEGTIKSRVYYGLRALRVALEEMGYED*