ggKbase home page

scnpilot_solids2_trim150_scaffold_910_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_910_curated_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..600
DNA (600bp) protein (200aa)
Aldehyde dehydrogenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP82_PARL1
aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000313|EMBL:ABS61715.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_910_curated_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

630..1391
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TS02_TISMK
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_910_curated_3
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1418..2068
DNA (651bp) protein (217aa)
Glutathione S transferase protein n=1 Tax=Azoarcus sp. KH32C RepID=H0PZT2_9RHOO
glutathione S transferase protein
Glutathione S transferase protein {ECO:0000313|EMBL:BAL25570.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
scnpilot_solids2_trim150_scaffold_910_curated_4
unknown

Not on your lists

comp(2081..2407)
DNA (327bp) protein (109aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_910_curated_5
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2725..3204
DNA (480bp) protein (160aa)
Putative competence-damaged inducible protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RHF6_PHEZH
competence-damaged inducible protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
scnpilot_solids2_trim150_scaffold_910_curated_6
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3288..3956
DNA (669bp) protein (223aa)
Putative ABC transporter involved in resistance to organic solvents n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z9J1_AZOL4
putative ABC transporter involved in resistance to organic solvents
Putative ABC transporter involved in resistance to organic solvents {ECO:0000313|EMBL:CBS86107.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
scnpilot_solids2_trim150_scaffold_910_curated_7
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3961..4593)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00036FC66E
Uncharacterized protein {ECO:0000313|EMBL:EDP62541.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
scnpilot_solids2_trim150_scaffold_910_curated_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4775..6067
DNA (1293bp) protein (431aa)
membrane dipeptidase (EC:3.4.13.19); K01273 membrane dipeptidase [EC:3.4.13.19]
Membrane dipeptidase {ECO:0000313|EMBL:ABZ71669.1}; EC=3.4.13.19 {ECO:0000313|EMBL:ABZ71669.1};; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
Membrane dipeptidase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SWP1_CAUSK
scnpilot_solids2_trim150_scaffold_910_curated_9
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6101..7705
DNA (1605bp) protein (535aa)
Beta-carotene ketolase n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3APS4_9CAUL
Beta-carotene ketolase {ECO:0000313|EMBL:GAD59719.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
amine oxidase
scnpilot_solids2_trim150_scaffold_910_curated_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7767..9311
DNA (1545bp) protein (515aa)
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Thiamine pyrophosphate protein domain protein TPP-binding n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR45_PARL1
Thiamine pyrophosphate protein domain protein TPP-binding {ECO:0000313|EMBL:ABS62378.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_910_curated_11
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9315..10526)
DNA (1212bp) protein (404aa)
peptidase M20D, amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32]
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002FF8B28
Putative amidohydrolase {ECO:0000313|EMBL:GAO38621.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
scnpilot_solids2_trim150_scaffold_910_curated_12
unknown

Not on your lists

10668..10799
DNA (132bp) protein (44aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_910_curated_13
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10796..11710
DNA (915bp) protein (305aa)
Sulfate adenylyltransferase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000256|HAMAP-Rule:MF_00064}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00064}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
sulfate adenylyltransferase (EC:2.7.7.4); K00957 sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
Sulfate adenylyltransferase subunit 2 n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RCL2_9RHIZ
scnpilot_solids2_trim150_scaffold_910_curated_14
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11710..13590
DNA (1881bp) protein (627aa)
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IW83_POLGS
bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein {ECO:0000313|EMBL:ADZ71468.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_910_curated_15
unknown

Not on your lists

13763..14023
DNA (261bp) protein (87aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_910_curated_16
unknown

Not on your lists

comp(14127..14825)
DNA (699bp) protein (233aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_910_curated_17

Not on your lists

comp(14782..17295)
DNA (2514bp) protein (838aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K1ZWX6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD60165.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_910_curated_18
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17507..18823)
DNA (1317bp) protein (439aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:ABC22916.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ABC22916.1};; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
UDP-glucose 6-dehydrogenase n=2 Tax=Rhodospirillum rubrum RepID=G2TCK2_RHORU
scnpilot_solids2_trim150_scaffold_910_curated_19
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18986..19867)
DNA (882bp) protein (294aa)
UTP-glucose-1-phosphate uridylyltransferase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
Glucose-1-phosphate uridylyltransferase n=2 Tax=Sphingomonas RepID=Q5FYV5_SPHEL
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
scnpilot_solids2_trim150_scaffold_910_curated_20
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19971..20948
DNA (978bp) protein (326aa)
NAD-dependent epimerase/dehydratase; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6]
NAD-dependent epimerase/dehydratase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024897F1
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:GAK46187.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scnpilot_solids2_trim150_scaffold_910_curated_21
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20970..21941
DNA (972bp) protein (324aa)
Putative O-linked N-acetylglucosamine transferase, SPINDLY family n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z600_9BRAD
putative O-linked N-acetylglucosamine transferase, SPINDLY family
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids2_trim150_scaffold_910_curated_22
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22024..23214
DNA (1191bp) protein (397aa)
Hydroxymethylglutaryl-CoA synthase {ECO:0000313|EMBL:CDO61157.1}; EC=2.3.3.10 {ECO:0000313|EMBL:CDO61157.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXP3_PARL1
hypothetical protein
Displaying 22 items

View Taxonomy