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scnpilot_solids2_trim150_scaffold_582_curated

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_582_curated_1
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..365)
DNA (363bp) protein (121aa)
cytochrome C oxidase subunit I n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489846
hypothetical protein
Integral membrane-like protein {ECO:0000313|EMBL:ABQ68158.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_solids2_trim150_scaffold_582_curated_2
Sphingomonas sp. NS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(380..562)
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489845
Uncharacterized protein {ECO:0000313|EMBL:AJW29225.1}; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_582_curated_3
Sphingomonas sp. NS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(559..1440)
DNA (882bp) protein (294aa)
Cbb3-type cytochrome c oxidase subunit n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MN39_9SPHN
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
cbb3-type cytochrome c oxidase subunit III; K00406 cytochrome c oxidase cbb3-type subunit III
scnpilot_solids2_trim150_scaffold_582_curated_4
Sphingomonas sp. NS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1431..1601)
DNA (171bp) protein (57aa)
Cytochrome c oxidase subunit CcoQ {ECO:0000313|EMBL:AJW29227.1}; EC=1.9.3.1 {ECO:0000313|EMBL:AJW29227.1};; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
Cbb3-type cytochrome oxidase component n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V794_SPHWW
Cbb3-type cytochrome oxidase component; K00407 cytochrome c oxidase cbb3-type subunit IV
scnpilot_solids2_trim150_scaffold_582_curated_5
Sphingomonas sp. NS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1607..2344)
DNA (738bp) protein (246aa)
Cytochrome c oxidase subunit CcoO {ECO:0000313|EMBL:AJW29228.1}; EC=1.9.3.1 {ECO:0000313|EMBL:AJW29228.1};; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
peptidase S41 n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489842
cbb3-type cytochrome c oxidase subunit II; K00405 cytochrome c oxidase cbb3-type subunit II
scnpilot_solids2_trim150_scaffold_582_curated_6
Sphingomonas sp. NS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2351..4000)
DNA (1650bp) protein (550aa)
Cytochrome c oxidase subunit CcoN {ECO:0000313|EMBL:AJW29229.1}; EC=1.9.3.1 {ECO:0000313|EMBL:AJW29229.1};; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
cbb3-type cytochrome c oxidase subunit I (EC:1.9.3.1); K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1]
Cytochrome c oxidase subunit CcoN n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MIG6_9SPHN
scnpilot_solids2_trim150_scaffold_582_curated_7
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4282..4845)
DNA (564bp) protein (188aa)
Membrane protein {ECO:0000313|EMBL:KGI78579.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein id=5083697 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
scnpilot_solids2_trim150_scaffold_582_curated_8
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5105..5560)
DNA (456bp) protein (152aa)
Aldehyde dehydrogenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RHT8_PHEZH
aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000313|EMBL:ACG79129.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
scnpilot_solids2_trim150_scaffold_582_curated_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5599..7143)
DNA (1545bp) protein (515aa)
AMP-dependent synthetase and ligase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRD8_PARL1
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABS62471.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_582_curated_10
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7253..8125
DNA (873bp) protein (291aa)
Alpha/beta hydrolase fold n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQB9_PARL1
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:GAK45606.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
alpha/beta hydrolase fold protein
scnpilot_solids2_trim150_scaffold_582_curated_11
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8111..8716)
DNA (606bp) protein (202aa)
Transcriptional regulator, TetR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQB5_PARL1
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABS62098.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_582_curated_12
unknown

Not on your lists

comp(8869..9243)
DNA (375bp) protein (125aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_582_curated_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9340..9939)
DNA (600bp) protein (200aa)
ThiJ/PfpI domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQB0_PARL1
ThiJ/PfpI domain-containing protein
ThiJ/PfpI domain protein {ECO:0000313|EMBL:ABS62093.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_582_curated_14
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9965..11062)
DNA (1098bp) protein (366aa)
Methyltransferase type 12 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQC9_PARL1
Methyltransferase {ECO:0000313|EMBL:AIB13813.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
conserved protein of unknown function; putative methyltransferase and TPR domains
scnpilot_solids2_trim150_scaffold_582_curated_15
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11040..11894)
DNA (855bp) protein (285aa)
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQD0_PARL1
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase {ECO:0000313|EMBL:GAK45617.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase
scnpilot_solids2_trim150_scaffold_582_curated_16
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11972..13738)
DNA (1767bp) protein (589aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase {ECO:0000313|EMBL:ACX94892.1}; EC=2.3.2.2 {ECO:0000313|EMBL:ACX94892.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Gamma-glutamyltransferase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KVW5_HALNC
scnpilot_solids2_trim150_scaffold_582_curated_17
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13829..15658)
DNA (1830bp) protein (610aa)
cyclic nucleotide-binding protein n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI00037C9046
cyclic nucleotide-binding protein; K07001 NTE family protein
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:ABZ72282.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
scnpilot_solids2_trim150_scaffold_582_curated_18
Pseudomonas xanthomarina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15690..16481)
DNA (792bp) protein (264aa)
Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:CEG52555.1}; EC=1.1.1.69 {ECO:0000313|EMBL:CEG52555.1};; TaxID=271420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas xanthomarina.;"
gno; gluconate 5-dehydrogenase (EC:1.1.1.69); K00046 gluconate 5-dehydrogenase [EC:1.1.1.69]
short-chain dehydrogenase n=1 Tax=Perlucidibaca piscinae RepID=UPI0003B64394
scnpilot_solids2_trim150_scaffold_582_curated_19
Nitrincola lacisaponensis, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16478..17425)
DNA (948bp) protein (316aa)
Oxidoreductase, aldo/keto reductase family n=1 Tax=Rhodobacteraceae bacterium HTCC2083 RepID=B6ASM3_9RHOB
Spore coat polysaccharide biosynthesis protein spsF {ECO:0000313|EMBL:KDE41150.1}; TaxID=267850 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola lacisaponensis.;"
aldo/keto reductase
scnpilot_solids2_trim150_scaffold_582_curated_20
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17504..17917)
DNA (414bp) protein (138aa)
Thioesterase superfamily protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQD1_PARL1
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ABS62114.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_582_curated_21
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17914..18327)
DNA (414bp) protein (138aa)
Thioesterase superfamily protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9X0L4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDO60206.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
thioesterase superfamily protein
scnpilot_solids2_trim150_scaffold_582_curated_22
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18517..19827
DNA (1311bp) protein (437aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000361C8D7
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
scnpilot_solids2_trim150_scaffold_582_curated_23
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19894..20448
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S6W4_9BURK
Membrane protein {ECO:0000313|EMBL:KDP86732.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_582_curated_24
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20631..21836
DNA (1206bp) protein (402aa)
acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQD4_PARL1
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:GAK45622.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scnpilot_solids2_trim150_scaffold_582_curated_25
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21905..22561
DNA (657bp) protein (219aa)
SCP-like extracellular n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQA0_PARL1
hypothetical protein
SCP-like extracellular {ECO:0000313|EMBL:ABS62083.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_582_curated_26
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22632..23012
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JRV9_9PROT
Membrane protein {ECO:0000313|EMBL:KGM32234.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_582_curated_27
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23202..26252
DNA (3051bp) protein (1017aa)
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003B3FA72
TPR repeat, SEL1 subfamily {ECO:0000313|EMBL:CDO60168.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
peptidoglycan binding domain-containing protein; K13582 localization factor PodJL
scnpilot_solids2_trim150_scaffold_582_curated_28
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26410..27324
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U4Q1_RHIRD
Membrane protein, putative {ECO:0000313|EMBL:CDO60167.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
putative permease; putative membrane protein
scnpilot_solids2_trim150_scaffold_582_curated_29
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27321..28082
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B6623C
Conserved protein {ECO:0000313|EMBL:GAK45588.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_582_curated_30
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28007..28759)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00035CD3C0
Phosphoesterase {ECO:0000313|EMBL:KIZ33000.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
metallophosphoesterase; K06953
Displaying items 1-30 of 50 in total

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