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scnpilot_solids2_trim150_scaffold_935_curated

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_935_curated_1
unknown

Not on your lists

comp(1..99)
DNA (99bp) protein (33aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_935_curated_2
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

222..1844
DNA (1623bp) protein (541aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000313|EMBL:CDO59202.1}; EC=1.1.5.3 {ECO:0000313|EMBL:CDO59202.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
FAD dependent oxidoreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTQ7_PARL1
scnpilot_solids2_trim150_scaffold_935_curated_3
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1841..2779
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000372885F
Diacylglycerol kinase catalytic subunit {ECO:0000313|EMBL:GAK45472.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
diacylglycerol kinase; K07029
scnpilot_solids2_trim150_scaffold_935_curated_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2806..4476
DNA (1671bp) protein (557aa)
alkylglycerone-phosphate synthase; K00803 alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26]
Alkylglycerone-phosphate synthase {ECO:0000313|EMBL:ABS63288.1}; EC=2.5.1.26 {ECO:0000313|EMBL:ABS63288.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Alkylglycerone-phosphate synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTQ5_PARL1
scnpilot_solids2_trim150_scaffold_935_curated_5

Not on your lists

comp(4473..5423)
DNA (951bp) protein (317aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=G3CRG1_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:AEM45144.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
alpha/beta hydrolase domain-containing protein
scnpilot_solids2_trim150_scaffold_935_curated_6
unknown

Not on your lists

comp(5493..5699)
DNA (207bp) protein (69aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_935_curated_7
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5759..6316)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030FDD16
Uncharacterized protein {ECO:0000313|EMBL:EAS49353.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_935_curated_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6313..8190)
DNA (1878bp) protein (626aa)
acyl-CoA synthetase; K12508 feruloyl-CoA synthase [EC:6.2.1.34]
AMP-dependent synthetase and ligase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTP7_PARL1
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABS63280.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_935_curated_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8295..9506
DNA (1212bp) protein (404aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5]
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:ABS65254.1}; EC=4.1.1.36 {ECO:0000313|EMBL:ABS65254.1};; EC=6.3.2.5 {ECO:0000313|EMBL:ABS65254.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZC1_PARL1
scnpilot_solids2_trim150_scaffold_935_curated_10
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9506..9964
DNA (459bp) protein (153aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=349215 species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus EPB.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VE95_9PROT
scnpilot_solids2_trim150_scaffold_935_curated_11
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9971..10423
DNA (453bp) protein (151aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZB9_PARL1
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:ABS65252.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_935_curated_12
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10438..11397
DNA (960bp) protein (320aa)
Cysteine synthase A n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QEP1_METSZ
cysteine synthase A
Cysteine synthase A {ECO:0000313|EMBL:CCJ05816.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
scnpilot_solids2_trim150_scaffold_935_curated_13
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11429..12055
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JDM5_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB66487.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
scnpilot_solids2_trim150_scaffold_935_curated_14
Pseudomonas poae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12062..13147)
DNA (1086bp) protein (362aa)
Xenobiotic reductase A n=2 Tax=Pseudomonas fluorescens group RepID=M4JZ80_9PSED
xenobiotic reductase A
Xenobiotic reductase A {ECO:0000313|EMBL:AGE26148.1}; TaxID=1282356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas poae RE*1-1-14.;"
scnpilot_solids2_trim150_scaffold_935_curated_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13160..14101)
DNA (942bp) protein (314aa)
glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPJ8_PARL1
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:ABS61831.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_935_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14259..15542)
DNA (1284bp) protein (428aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTT5_PARL1
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABS63318.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_935_curated_17
unknown

Not on your lists

15820..15918
DNA (99bp) protein (33aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_935_curated_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15981..17450
DNA (1470bp) protein (490aa)
MATE efflux family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7J2_9BRAD
MATE efflux family protein {ECO:0000313|EMBL:EFI51202.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
MATE efflux family protein; K03327 multidrug resistance protein, MATE family
scnpilot_solids2_trim150_scaffold_935_curated_19
unknown

Not on your lists

17544..17972
DNA (429bp) protein (143aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_935_curated_20
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18156..19718)
DNA (1563bp) protein (521aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
2-polyprenylphenol 6-hydroxylase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZC2_PARL1
2-polyprenylphenol 6-hydroxylase; K03688 ubiquinone biosynthesis protein
scnpilot_solids2_trim150_scaffold_935_curated_21
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19718..20479)
DNA (762bp) protein (254aa)
2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201]
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=2 Tax=Rhodospirillum rubrum RepID=Q2RMQ3_RHORT
scnpilot_solids2_trim150_scaffold_935_curated_22
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20510..21334
DNA (825bp) protein (275aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020854}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Formamidopyrimidine-DNA glycosylase n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V1Q9_9RHOB
scnpilot_solids2_trim150_scaffold_935_curated_23
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21325..21735)
DNA (411bp) protein (137aa)
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:CCG04910.1}; EC=2.1.1.64 {ECO:0000313|EMBL:CCG04910.1};; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RK54_BLASD
3-demethylubiquinone-9 3-methyltransferase
scnpilot_solids2_trim150_scaffold_935_curated_24

Not on your lists

21843..22409
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HB67_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KKN77386.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_935_curated_25
Serratia sp. DD3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22419..22868)
DNA (450bp) protein (150aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Serratia sp. DD3 RepID=V5C4B0_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KEY60996.1}; TaxID=1410619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. DD3.;"
activator of Hsp90 ATPase 1 family protein
scnpilot_solids2_trim150_scaffold_935_curated_26
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22870..23328)
DNA (459bp) protein (153aa)
Cog3832, uncharacterized conserved protein n=2 Tax=Ralstonia solanacearum RepID=B5SFY4_RALSL
hypothetical protein
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EAP71396.1}; TaxID=342110 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum UW551.;"
scnpilot_solids2_trim150_scaffold_935_curated_27
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23325..23807)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ER82_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF07588.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
scnpilot_solids2_trim150_scaffold_935_curated_28
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23890..24198)
DNA (309bp) protein (103aa)
UPI0003CF1BA8 related cluster n=1 Tax=unknown RepID=UPI0003CF1BA8
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:AEH85441.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
scnpilot_solids2_trim150_scaffold_935_curated_29
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24357..24779
DNA (423bp) protein (141aa)
peptidyl-tRNA hydrolase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B598B2
Peptide chain release factor I {ECO:0000313|EMBL:KJS34056.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
putative Class I peptide chain release factor domain protein
scnpilot_solids2_trim150_scaffold_935_curated_30
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25182..25724
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2ITR7_RHOP2
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
Displaying items 1-30 of 82 in total

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