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scnpilot_solids2_trim150_scaffold_1031_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1031_curated_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2..208
DNA (207bp) protein (69aa)
Radical SAM domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK14_NIAKG
radical SAM protein
Radical SAM domain protein {ECO:0000313|EMBL:AEW02952.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1031_curated_2
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

319..1158
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0PQB1_ELIME
Contig6, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78743.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
huntingtin interacting protein E-like protein
scnpilot_solids2_trim150_scaffold_1031_curated_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1303..2862)
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB84_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02467.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1031_curated_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2976..3431)
DNA (456bp) protein (152aa)
Regulatory protein MarR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB85_NIAKG
regulatory protein MarR
Regulatory protein MarR {ECO:0000313|EMBL:AEW02468.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1031_curated_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3672..4151
DNA (480bp) protein (160aa)
Peptide methionine sulfoxide reductase msrB; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8U0_NIAKG
scnpilot_solids2_trim150_scaffold_1031_curated_6
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4401..5249)
DNA (849bp) protein (283aa)
arsenite S-adenosylmethyltransferase n=1 Tax=Pedobacter arcticus RepID=UPI00030DC0F5
Arsenite S-adenosylmethyltransferase {ECO:0000313|EMBL:KIC96204.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
type 11 methyltransferase
scnpilot_solids2_trim150_scaffold_1031_curated_7
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(5303..5635)
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037917AC
ArsR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
scnpilot_solids2_trim150_scaffold_1031_curated_8
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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5744..6115
DNA (372bp) protein (124aa)
Putative fluoride ion transporter CrcB n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W0W6_9FLAO
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
crcB; hypothetical protein; K06199 CrcB protein
scnpilot_solids2_trim150_scaffold_1031_curated_9
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(6313..7581)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3ES27_AMOA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE06029.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
scnpilot_solids2_trim150_scaffold_1031_curated_10
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(7686..8444)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Flavobacterium sp. ACAM 123 RepID=UPI000365D580
Restriction endonuclease subunit R {ECO:0000313|EMBL:KFC18294.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1031_curated_11
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

comp(8514..10700)
DNA (2187bp) protein (729aa)
Type III restriction protein res subunit n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0IZA6_CYCMS
type III restriction protein res subunit
Tax=BJP_IG2103_Bacteroidetes_41_9
scnpilot_solids2_trim150_scaffold_1031_curated_12
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10897..11226)
DNA (330bp) protein (110aa)
ATP-dependent DNA helicase {ECO:0000313|EMBL:AKB25394.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. MTP4.;"
Putative transcriptional regulator id=3222988 bin=GWF2_OP9_related_35_9 species=Methanomethylovorans hollandica genus=Methanomethylovorans taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
transcriptional regulator
scnpilot_solids2_trim150_scaffold_1031_curated_13
GWF2_RBX1_35_9_curated, RBX1, Bacteria

Not on your lists

comp(11231..12379)
DNA (1149bp) protein (383aa)
transcriptional regulator; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
Putative transcriptional regulator id=3222988 bin=GWF2_OP9_related_35_9 species=Methanomethylovorans hollandica genus=Methanomethylovorans taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
Tax=GWF2_RBX1_35_9_curated
scnpilot_solids2_trim150_scaffold_1031_curated_14
unknown

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13677..13955
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035D2853
scnpilot_solids2_trim150_scaffold_1031_curated_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14560..15174)
DNA (615bp) protein (205aa)
Multiple antibiotic resistance (MarC)-related protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NNX0_9SPHI
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
multiple antibiotic resistance (MarC)-like protein; K05595 multiple antibiotic resistance protein
scnpilot_solids2_trim150_scaffold_1031_curated_16
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15283..16404)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000362303B
Membrane protein {ECO:0000313|EMBL:AKD56306.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1031_curated_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16421..17557)
DNA (1137bp) protein (379aa)
membrane protein n=1 Tax=Segetibacter koreensis RepID=UPI00035D0F47
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02967.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1031_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18019..18405)
DNA (387bp) protein (129aa)
VanZ family protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQS9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17753.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1031_curated_19
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18421..18801)
DNA (381bp) protein (127aa)
glycine cleavage system protein H n=1 Tax=Cytophagales str. B6 RepID=UPI0003B51A86
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
gcvH; Glycine cleavage system H protein; K02437 glycine cleavage system H protein
scnpilot_solids2_trim150_scaffold_1031_curated_20
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18874..19224)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMJ3_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC89669.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1031_curated_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19532..20773
DNA (1242bp) protein (414aa)
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Seryl-tRNA synthetase {ECO:0000313|EMBL:AEW01983.1}; EC=6.1.1.11 {ECO:0000313|EMBL:AEW01983.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
seryl-tRNA synthetase n=1 Tax=Niabella aurantiaca RepID=UPI000370EAF8
Displaying 21 items

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