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scnpilot_solids2_trim150_scaffold_53_curated

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Displaying items 1-30 of 248 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_53_curated_1
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..126
DNA (126bp) protein (42aa)
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:CDW92825.1}; EC=1.3.8.6 {ECO:0000313|EMBL:CDW92825.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Putative acyl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus B4 RepID=T1X2X7_VARPD
putative acyl-CoA dehydrogenase
scnpilot_solids2_trim150_scaffold_53_curated_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132..551
DNA (420bp) protein (140aa)
Putative 4-hydroxybenzoyl CoA thioesterase {ECO:0000313|EMBL:CDM25521.1}; EC=3.1.2.23 {ECO:0000313|EMBL:CDM25521.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
4-hydroxybenzoyl-CoA thioesterase; K01075 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
Putative 4-hydroxybenzoyl-CoA thioesterase protein n=2 Tax=Ralstonia pickettii RepID=B2UHA0_RALPJ
scnpilot_solids2_trim150_scaffold_53_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

573..1505
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8K0_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34983.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
scnpilot_solids2_trim150_scaffold_53_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1515..2309)
DNA (795bp) protein (265aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K05833 putative ABC transport system ATP-binding protein
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1S8_ALIDB
ATP-binding protein {ECO:0000313|EMBL:GAO23233.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_solids2_trim150_scaffold_53_curated_5
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2326..3234)
DNA (909bp) protein (303aa)
Inner-membrane translocator n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W7A3_ACISJ
inner-membrane translocator; K05832 putative ABC transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ACM33206.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids2_trim150_scaffold_53_curated_6
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3324..4289)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W7A4_ACISJ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJA09131.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein; K01989 putative ABC transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_53_curated_7
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4445..6139)
DNA (1695bp) protein (565aa)
dehydrogenase n=1 Tax=Acidovorax radicis RepID=UPI00023758E2
electron-transferring-flavoprotein dehydrogenase
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids2_trim150_scaffold_53_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6514..6942)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000362CE1F
Uncharacterized protein {ECO:0000313|EMBL:GAD22162.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein; K09790 hypothetical protein
scnpilot_solids2_trim150_scaffold_53_curated_9
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6948..7502
DNA (555bp) protein (185aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
peptide deformylase n=1 Tax=Acidovorax radicis RepID=UPI000237517E
peptide deformylase
scnpilot_solids2_trim150_scaffold_53_curated_10
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7454..7825)
DNA (372bp) protein (124aa)
Thioredoxin domain-containing protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q0R0_ACIAP
thioredoxin domain-containing protein; K03671 thioredoxin 1
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_solids2_trim150_scaffold_53_curated_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7827..9161)
DNA (1335bp) protein (445aa)
molybdenum cofactor synthesis domain-containing protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
molybdenum cofactor biosynthesis protein MoaA n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035DC3CE
Molybdopterin biosynthesis enzyme {ECO:0000313|EMBL:GAD23992.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_solids2_trim150_scaffold_53_curated_12
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9158..9775)
DNA (618bp) protein (206aa)
mobA; molybdopterin-guanine dinucleotide biosynthesis protein moba; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
Molybdenum cofactor guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; Short=MoCo guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000255|HAMAP-Rule:MF_00316};; GTP:molybdopterin guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000255|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000255|HAMAP-Rule:MF_00316}; Short=MGD synthase {ECO:0000255|HAMAP-R
Molybdenum cofactor guanylyltransferase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=MOBA_ACIET
scnpilot_solids2_trim150_scaffold_53_curated_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9782..10960)
DNA (1179bp) protein (393aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
molybdenum cofactor biosynthesis protein MoeA n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000364BF6C
molybdenum cofactor biosynthesis protein a; K03639 molybdenum cofactor biosynthesis protein
scnpilot_solids2_trim150_scaffold_53_curated_14
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11134..12039
DNA (906bp) protein (302aa)
hypothetical protein id=12557254 bin=CNBR_ACIDO species=Limnohabitans sp. Rim47 genus=Limnohabitans taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
scnpilot_solids2_trim150_scaffold_53_curated_15
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12011..14449)
DNA (2439bp) protein (813aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
lon; DNA-binding ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Lon protease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IAB0_9BRAD
scnpilot_solids2_trim150_scaffold_53_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14446..14844)
DNA (399bp) protein (133aa)
Molecular chaperone (Small heat shock protein)-like protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EMF3_METSB
Precorrin-6X reductase {ECO:0000313|EMBL:KFC68471.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
molecular chaperone (small heat shock protein)-like protein
scnpilot_solids2_trim150_scaffold_53_curated_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14906..15406)
DNA (501bp) protein (167aa)
Activator of Hsp90 ATPase 1 family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TTY6_ALIDB
Activator of Hsp90 ATPase 1 family protein
ATPase 1 family protein {ECO:0000313|EMBL:GAO25987.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_solids2_trim150_scaffold_53_curated_18
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15590..16087)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035F622E
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
scnpilot_solids2_trim150_scaffold_53_curated_19
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16125..19445)
DNA (3321bp) protein (1107aa)
Type I restriction-modification system restriction subunit n=1 Tax=Pseudomonas poae RE*1-1-14 RepID=M4KC30_9PSED
type I restriction-modification system restriction subunit
Tax=GWA2_Gallionellales_60_18_curated
scnpilot_solids2_trim150_scaffold_53_curated_20
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19488..20561)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VHN6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL44328.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
scnpilot_solids2_trim150_scaffold_53_curated_21
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20575..20784)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI000262530A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX35074.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
scnpilot_solids2_trim150_scaffold_53_curated_22
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20872..21294)
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Alcaligenes RepID=M5IWA4_9BURK
Zeta toxin family protein {ECO:0000313|EMBL:ERI34629.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_53_curated_23
Pseudomonas poae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21291..22526)
DNA (1236bp) protein (412aa)
Restriction modification system DNA specificity subunit n=1 Tax=Pseudomonas poae RE*1-1-14 RepID=M4K5K2_9PSED
restriction modification system DNA specificity subunit
Restriction modification system DNA specificity subunit {ECO:0000313|EMBL:AGE28274.1}; TaxID=1282356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas poae RE*1-1-14.;"
scnpilot_solids2_trim150_scaffold_53_curated_24
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22523..23566)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI00035C4777
Putative uncharacterized protein {ECO:0000313|EMBL:EGV33946.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_53_curated_25
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23563..25722)
DNA (2160bp) protein (720aa)
hsdM2; type I restriction-modification system DNA methyltransferase subunit (EC:2.1.1.72); K03427 type I restriction enzyme M protein [EC:2.1.1.72]
Type I restriction-modification system DNA methyltransferase subunit n=1 Tax=gamma proteobacterium HdN1 RepID=E1VHN4_9GAMM
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
scnpilot_solids2_trim150_scaffold_53_curated_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(25994..26377)
DNA (384bp) protein (128aa)
ABC drug efflux pump, inner membrane subunit, DrrB family id=4035240 bin=GWC2_Methylomirabilis_70_16 species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWA2_Rokubacteria_73_35_curated
scnpilot_solids2_trim150_scaffold_53_curated_27
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26486..27865
DNA (1380bp) protein (460aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TNT3_ACIAC
RND family efflux transporter MFP subunit; K07799 putative multidrug efflux transporter MdtA
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ABM32621.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_solids2_trim150_scaffold_53_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28020..31178
DNA (3159bp) protein (1053aa)
acriflavin resistance protein n=1 Tax=Variovorax paradoxus RepID=UPI0003694BA5
mdtB; multidrug resistance protein MdtB
Multidrug resistance protein MdtB {ECO:0000313|EMBL:AGU50812.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
scnpilot_solids2_trim150_scaffold_53_curated_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31175..32026
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5H0_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34776.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
scnpilot_solids2_trim150_scaffold_53_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32023..35217
DNA (3195bp) protein (1065aa)
Acriflavin resistance protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CTN5_VARPS
acriflavin resistance protein; K07789 RND superfamily, multidrug transport protein MdtC
Acriflavin resistance protein {ECO:0000313|EMBL:ACS20223.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Displaying items 1-30 of 248 in total

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