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scnpilot_solids2_trim150_scaffold_241_curated

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Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_241_curated_1
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(802..1257)
DNA (456bp) protein (152aa)
HK97 family phage portal protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZ53_9BURK
HK97 family phage portal protein
HK97 family phage portal protein {ECO:0000313|EMBL:AFU46132.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_solids2_trim150_scaffold_241_curated_2
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1304..1549
DNA (246bp) protein (82aa)
UPI0003D5DB6D related cluster n=1 Tax=unknown RepID=UPI0003D5DB6D
uncharacterized oxidoreductase TM_0325-like
Putative short chain dehydrogenase {ECO:0000313|EMBL:AHC49196.1}; TaxID=1216976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NBRC 15126 = ATCC 27061.;"
scnpilot_solids2_trim150_scaffold_241_curated_3
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1561..1851
DNA (291bp) protein (97aa)
Uncharacterized protein n=3 Tax=Bordetella bronchiseptica RepID=K0MQW2_BORBM
Stress responsive A/B barrel domain protein {ECO:0000313|EMBL:KCV62056.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_241_curated_4
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1931..2515)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA97_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI50391.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_241_curated_5
Renibacterium salmoninarum, Renibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2573..3478)
DNA (906bp) protein (302aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=288705 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Renibacterium.;" source="Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484; / NBRC 15589 / NCIMB 2235).;"
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) RepID=A9WQX6_RENSM
scnpilot_solids2_trim150_scaffold_241_curated_6
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3554..4903)
DNA (1350bp) protein (450aa)
Ferric reductase domain protein protein transmembrane component domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7N4_STAND
ferric reductase transmembrane domain-containing protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids2_trim150_scaffold_241_curated_7
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5114..5752)
DNA (639bp) protein (213aa)
scoB; succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B protein (EC:2.8.3.5)
Putative succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B protein {ECO:0000313|EMBL:CCN21148.1}; EC=2.8.3.5 {ECO:0000313|EMBL:CCN21148.1};; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
Putative succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B protein n=1 Tax=Bordetella bronchiseptica D445 RepID=K4TJ90_BORBO
scnpilot_solids2_trim150_scaffold_241_curated_8
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5764..6471)
DNA (708bp) protein (236aa)
scoA; 3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
3-oxoacid CoA-transferase subunit A {ECO:0000313|EMBL:CAP41507.1}; EC=2.8.3.5 {ECO:0000313|EMBL:CAP41507.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
3-oxoacid CoA-transferase subunit A n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IC06_BORPD
scnpilot_solids2_trim150_scaffold_241_curated_9
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6627..7532)
DNA (906bp) protein (302aa)
LysR family regulatory protein n=3 Tax=Bordetella bronchiseptica RepID=K0MCM0_BORBM
LysR family regulatory protein
LysR substrate-binding domain protein {ECO:0000313|EMBL:KDD59676.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
scnpilot_solids2_trim150_scaffold_241_curated_10
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7875..8690
DNA (816bp) protein (272aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) RepID=Q7WCG4_BORPA
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:CAE35945.1}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;"
scnpilot_solids2_trim150_scaffold_241_curated_11
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8781..9941
DNA (1161bp) protein (387aa)
acyl-CoA dehydrogenase domain-containing protein; K06446 acyl-CoA dehydrogenase [EC:1.3.99.-]
UPI0003D69AF3 related cluster n=1 Tax=unknown RepID=UPI0003D69AF3
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:AHC49234.1}; TaxID=1216976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NBRC 15126 = ATCC 27061.;"
scnpilot_solids2_trim150_scaffold_241_curated_12
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10184..10681
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000377C421
Uncharacterized protein {ECO:0000313|EMBL:AGW89573.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
regulatory helix-turn-helix protein, MarR family protein 22
scnpilot_solids2_trim150_scaffold_241_curated_13
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10810..12840
DNA (2031bp) protein (677aa)
2%2C4-dienoyl-CoA reductase [NADPH] {ECO:0000313|EMBL:CKI02739.1}; EC=1.3.1.34 {ECO:0000313|EMBL:CKI02739.1};; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
2,4-dienoyl-CoA reductase (EC:1.3.1.34); K00219 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
2,4-dienoyl-CoA reductase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QF13_RALPI
scnpilot_solids2_trim150_scaffold_241_curated_14
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12895..13662
DNA (768bp) protein (256aa)
UPI0003D6962E related cluster n=1 Tax=unknown RepID=UPI0003D6962E
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:AHC49220.1}; TaxID=1216976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NBRC 15126 = ATCC 27061.;"
short-chain dehydrogenase
scnpilot_solids2_trim150_scaffold_241_curated_15
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13865..14530)
DNA (666bp) protein (222aa)
Membrane protein n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PSN8_9BURK
Membrane protein {ECO:0000313|EMBL:AHB05695.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_241_curated_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14553..16172)
DNA (1620bp) protein (540aa)
MscS Mechanosensitive ion channel n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBN4_GEOUR
mechanosensitive ion channel MscS
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ABQ25014.1}; Flags: Precursor;; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
scnpilot_solids2_trim150_scaffold_241_curated_17
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16201..17472)
DNA (1272bp) protein (424aa)
amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32]
Amidohydrolase n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PRU3_9BURK
Amidohydrolase {ECO:0000313|EMBL:AHB05696.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
scnpilot_solids2_trim150_scaffold_241_curated_18
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17729..18313)
DNA (585bp) protein (195aa)
lipoprotein id=12494735 bin=THIO_HI species=Comamonas testosteroni genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:KGH14716.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
lipoprotein
scnpilot_solids2_trim150_scaffold_241_curated_19
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18860..20212
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WS68_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42166.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
integrase family protein
scnpilot_solids2_trim150_scaffold_241_curated_20
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20209..21273
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WW33_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42165.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_241_curated_21
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21640..22032
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XRR4_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42164.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_241_curated_22
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22326..22676
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WQU7_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42163.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_241_curated_23
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23500..24324
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XAB6_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42162.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_241_curated_24
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24390..26585
DNA (2196bp) protein (732aa)
ParB family chromosome partitioning protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WS63_DELAC
ParB family chromosome partitioning protein {ECO:0000313|EMBL:EPD42161.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
nuclease
scnpilot_solids2_trim150_scaffold_241_curated_25
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26694..27389)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WW26_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42160.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
TetR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_241_curated_26
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27613..29178
DNA (1566bp) protein (522aa)
Long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XRQ8_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42159.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
scnpilot_solids2_trim150_scaffold_241_curated_27
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29214..30401
DNA (1188bp) protein (396aa)
Propanoyl-CoA C-acyltransferase (EC:2.3.1.176)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WQU2_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42158.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
scnpilot_solids2_trim150_scaffold_241_curated_28
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30413..31222
DNA (810bp) protein (270aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XAB2_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42157.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
scnpilot_solids2_trim150_scaffold_241_curated_29
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31260..32456
DNA (1197bp) protein (399aa)
Branched-chain amino acid transport system substrate-binding protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WS58_DELAC
Branched-chain amino acid transport system substrate-binding protein {ECO:0000313|EMBL:EPD42156.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_241_curated_30
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32505..33362
DNA (858bp) protein (286aa)
Branched-chain amino acid transport system permease n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WW18_DELAC
Branched-chain amino acid transport system permease {ECO:0000313|EMBL:EPD42155.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
Displaying items 1-30 of 115 in total

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