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scnpilot_solids2_trim150_scaffold_420_curated

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_420_curated_1
unknown

Not on your lists

243..806
DNA (564bp) protein (188aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_420_curated_2
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

803..1585
DNA (783bp) protein (261aa)
Na+/Ca+ antiporter, CaCA family n=1 Tax=Mycobacterium gilvum (strain PYR-GCK) RepID=A4T1P2_MYCGI
Sodium:calcium antiporter {ECO:0000313|EMBL:EZQ13134.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
CaCA family Na(+)/Ca(+) antiporter; K07301 inner membrane protein
scnpilot_solids2_trim150_scaffold_420_curated_3
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1812..4625
DNA (2814bp) protein (938aa)
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8A6_STAND
P-type HAD superfamily ATPase
ATPase, P-type (Transporting), HAD superfamily, subfamily IC {ECO:0000313|EMBL:ADH88579.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_420_curated_4
unknown

Not on your lists

comp(4475..4864)
DNA (390bp) protein (130aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_420_curated_5
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5175..5732)
DNA (558bp) protein (186aa)
Lipoate-protein ligase A-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2H2_POLGS
lipoate-protein ligase A
Lipoate-protein ligase A-like protein {ECO:0000313|EMBL:ADZ70887.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_420_curated_6
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5722..5967)
DNA (246bp) protein (82aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2) n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2H3_POLGS
dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2) {ECO:0000313|EMBL:ADZ70888.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_solids2_trim150_scaffold_420_curated_7
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5969..6544)
DNA (576bp) protein (192aa)
TPP-dependent acetoin dehydrogenase complex, E1 component subunit beta; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2H4_POLGS
Pyruvate dehydrogenase {ECO:0000313|EMBL:KGB81020.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
scnpilot_solids2_trim150_scaffold_420_curated_8
unknown

Not on your lists

comp(6559..6831)
DNA (273bp) protein (91aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_420_curated_9
Mesorhizobium sp. LSJC264A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6944..7180
DNA (237bp) protein (79aa)
Transposase n=1 Tax=Mesorhizobium sp. LSJC264A00 RepID=V7EP00_9RHIZ
Transposase {ECO:0000313|EMBL:ESX09807.1}; TaxID=1287321 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC264A00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_420_curated_10
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7385..7885)
DNA (501bp) protein (167aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JBT3_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07636.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_420_curated_11
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8257..8961)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003644A29
Uncharacterized protein {ECO:0000313|EMBL:EZQ15023.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein; K07322 regulator of cell morphogenesis and NO signaling
scnpilot_solids2_trim150_scaffold_420_curated_12
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9012..10712)
DNA (1701bp) protein (567aa)
Nitric-oxide reductase subunit B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTZ6_9GAMM
Nitric-oxide reductase {ECO:0000313|EMBL:EXL07935.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
nitric oxide reductase large subunit
scnpilot_solids2_trim150_scaffold_420_curated_13
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10709..11677)
DNA (969bp) protein (323aa)
Cytochrome c2 n=1 Tax=Rhodanobacter denitrificans RepID=M4NG81_9GAMM
Cytochrome C {ECO:0000313|EMBL:EZQ15021.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
cytochrome c2
scnpilot_solids2_trim150_scaffold_420_curated_14
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11674..11835)
DNA (162bp) protein (54aa)
Uncharacterized protein {ECO:0000313|EMBL:EZQ15020.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
scnpilot_solids2_trim150_scaffold_420_curated_15
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12106..12555
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003656A47
Rrf2 family transcriptional regulator {ECO:0000313|EMBL:EXL07938.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
BadM/Rrf2 family transcriptional regulator; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
scnpilot_solids2_trim150_scaffold_420_curated_16
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12656..13708)
DNA (1053bp) protein (351aa)
Rhodocoxin reductase {ECO:0000313|EMBL:CDX37063.1}; EC=1.18.1.- {ECO:0000313|EMBL:CDX37063.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
pyridine nucleotide-disulfide oxidoreductase; K00529 ferredoxin--NAD+ reductase [EC:1.18.1.3]
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000364963D
scnpilot_solids2_trim150_scaffold_420_curated_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14439..14672)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRA7_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30979.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_420_curated_18
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14669..15316)
DNA (648bp) protein (216aa)
Nifu protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAM0_OLICO
nifu protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05006.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_420_curated_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15363..15899)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3C9_9BRAD
SirA-like protein {ECO:0000313|EMBL:CEG07045.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_420_curated_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15920..17269)
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NPB5_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30976.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_420_curated_21
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17332..17592)
DNA (261bp) protein (87aa)
Hemerythrin HHE cation binding protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAM3_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05003.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_420_curated_22
unknown

Not on your lists

comp(17643..18131)
DNA (489bp) protein (163aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_420_curated_23
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18245..18820
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3D5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:AKH98806.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
scnpilot_solids2_trim150_scaffold_420_curated_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18820..19086
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07M05_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ07029.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
scnpilot_solids2_trim150_scaffold_420_curated_25
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19334..19609
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000369BE8E
Uncharacterized protein {ECO:0000313|EMBL:KJS10184.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_420_curated_26
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19643..20824)
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003677056
NnrS protein {ECO:0000313|EMBL:BAQ16583.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
NnrS family protein; K07234 uncharacterized protein involved in response to NO
scnpilot_solids2_trim150_scaffold_420_curated_27
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20821..21516)
DNA (696bp) protein (232aa)
NnrUfamily protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M115_METRJ
NnrU family protein {ECO:0000313|EMBL:AJY45537.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
NnrU family protein
scnpilot_solids2_trim150_scaffold_420_curated_28
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21669..22160
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000365E074
Nitrite-sensitive transcriptional repressor NsrR {ECO:0000313|EMBL:ESR23426.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
scnpilot_solids2_trim150_scaffold_420_curated_29
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22244..22639
DNA (396bp) protein (132aa)
ferredoxin n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036B2C42
Ferredoxin {ECO:0000313|EMBL:AHB47817.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; K05524 ferredoxin
scnpilot_solids2_trim150_scaffold_420_curated_30
Corynebacterium glutamicum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22590..24005
DNA (1416bp) protein (472aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00035CBC2F
hypothetical protein, MMGE/PRPD-family, putative involved in propoinate catabolism
MMGE/PRPD FAMILY PROTEIN {ECO:0000313|EMBL:CAF21200.1}; Uncharacterized protein involved in propionate catabolism {ECO:0000313|EMBL:BAB99931.1}; TaxID=196627 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /; LMG 3730 / NCIMB 10025).;"
Displaying items 1-30 of 51 in total

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