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scnpilot_solids2_trim150_scaffold_703_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_703_curated_1
Brucella pinnipedialis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..970)
DNA (969bp) protein (323aa)
Uncharacterized protein n=13 Tax=Brucella abortus RepID=N7AJ40_BRUAO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEZ29859.1}; TaxID=520462 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella pinnipedialis M292/94/1.;"
scnpilot_solids2_trim150_scaffold_703_curated_2
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1007..2008)
DNA (1002bp) protein (334aa)
serA5; phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:CAP44148.1}; EC=1.1.1.95 {ECO:0000313|EMBL:CAP44148.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Phosphoglycerate dehydrogenase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I3A7_BORPD
scnpilot_solids2_trim150_scaffold_703_curated_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2042..2842
DNA (801bp) protein (267aa)
methyltransferase, S-adenosyl-L-methionine (SAM)-MTase (EC:2.1.1.-)
Methyltransferase, S-adenosyl-L-methionine (SAM)-MTase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUB9_9RHIZ
Methyltransferase, S-adenosyl-L-methionine (SAM)-MTase {ECO:0000313|EMBL:EHK55755.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
scnpilot_solids2_trim150_scaffold_703_curated_4
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3019..3909
DNA (891bp) protein (297aa)
Transporter n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7F9S8_9RHIZ
Transporter {ECO:0000313|EMBL:ESX64278.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
EamA-like transporter family
scnpilot_solids2_trim150_scaffold_703_curated_5
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3984..4229
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EUT0_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ39924.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
scnpilot_solids2_trim150_scaffold_703_curated_6
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4229..4624
DNA (396bp) protein (132aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Ribonuclease VapC n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EUS9_BRASB
hypothetical protein
scnpilot_solids2_trim150_scaffold_703_curated_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4627..5379)
DNA (753bp) protein (251aa)
3-demethylubiquinone-9 3-methyltransferase; K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HMW9_9RHIZ
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
scnpilot_solids2_trim150_scaffold_703_curated_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5528..6541)
DNA (1014bp) protein (338aa)
Extracellular solute-binding protein family 3 n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VCW9_RHOPX
family 3 extracellular solute-binding protein
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADU45038.1}; Flags: Precursor;; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
scnpilot_solids2_trim150_scaffold_703_curated_9
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6580..7368)
DNA (789bp) protein (263aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3IXV1_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KDB02008.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
scnpilot_solids2_trim150_scaffold_703_curated_10
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7365..8231)
DNA (867bp) protein (289aa)
Putative ABC-transporter (ATP-binding protein) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TNQ7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KDB02007.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
ABC transporter, ATP-binding protein
scnpilot_solids2_trim150_scaffold_703_curated_11
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8430..9497
DNA (1068bp) protein (356aa)
Iron ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LSJC264A00 RepID=V7ET33_9RHIZ
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESX69634.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_703_curated_12
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9759..11966
DNA (2208bp) protein (736aa)
Iron ABC transporter permease n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HN32_9RHIZ
Iron ABC transporter permease {ECO:0000313|EMBL:ESZ65009.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein
scnpilot_solids2_trim150_scaffold_703_curated_13
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11982..13112
DNA (1131bp) protein (377aa)
Fe(3+) ions import ATP-binding protein FbpC {ECO:0000256|HAMAP-Rule:MF_01706}; EC=3.6.3.30 {ECO:0000256|HAMAP-Rule:MF_01706};; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
fbpC1; Fe(3+) ions import ATP-binding protein FbpC 1 (EC:3.6.3.30)
Sugar ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HR51_9RHIZ
scnpilot_solids2_trim150_scaffold_703_curated_14
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13451..14725
DNA (1275bp) protein (425aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
aspartate kinase; K00928 aspartate kinase [EC:2.7.2.4]
aspartate kinase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003700DCC
scnpilot_solids2_trim150_scaffold_703_curated_15
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14918..17191
DNA (2274bp) protein (758aa)
PTSINtr with GAF domain, PtsP; K08484 phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HMZ7_9RHIZ
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000313|EMBL:EHK57909.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
scnpilot_solids2_trim150_scaffold_703_curated_16
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17188..18264
DNA (1077bp) protein (359aa)
peptide chain release factor 1 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F4AD29
peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
scnpilot_solids2_trim150_scaffold_703_curated_17
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18299..19156
DNA (858bp) protein (286aa)
HemK family modification methylase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium
UPI0003CEB364 related cluster n=1 Tax=unknown RepID=UPI0003CEB364
scnpilot_solids2_trim150_scaffold_703_curated_18
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19493..20218
DNA (726bp) protein (242aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HN02_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57914.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_703_curated_19
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20520..23150
DNA (2631bp) protein (877aa)
PREDICTED: chaperone protein ClpB2, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C17FA5
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
scnpilot_solids2_trim150_scaffold_703_curated_20
Mesorhizobium sp. LNJC399B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23446..24960
DNA (1515bp) protein (505aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FB5123
Uncharacterized protein {ECO:0000313|EMBL:ESY08023.1}; TaxID=1287277 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC399B00.;"
ErfK/YbiS/YcfS/YnhG family protein
scnpilot_solids2_trim150_scaffold_703_curated_21
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25150..27096)
DNA (1947bp) protein (649aa)
Peptidase M23 n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TAN0_MESCW
Peptidase M23 {ECO:0000313|EMBL:CDX24176.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
peptidase M23
Displaying 21 items

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