ggKbase home page

scnpilot_solids2_trim150_scaffold_559_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_559_curated_1
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..161)
DNA (159bp) protein (53aa)
Beta-ketoadipyl-CoA thiolase {ECO:0000313|EMBL:CCF21462.1}; EC=2.3.1.174 {ECO:0000313|EMBL:CCF21462.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
beta-ketoadipyl CoA thiolase; K00632 acetyl-CoA acyltransferase [EC:2.3.1.16]
Beta-ketoadipyl-CoA thiolase n=1 Tax=Rhizobium sp. RepID=L0NMB2_RHISP
scnpilot_solids2_trim150_scaffold_559_curated_2
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163..834)
DNA (672bp) protein (224aa)
3-oxoacid CoA-transferase subunit B (EC:2.8.3.5); K01032 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
3-oxoadipate CoA-transferase subunit B n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F470BB
3-oxoacid CoA-transferase {ECO:0000313|EMBL:KGJ10627.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
scnpilot_solids2_trim150_scaffold_559_curated_3
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(831..1550)
DNA (720bp) protein (240aa)
Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit {ECO:0000313|EMBL:KFC68073.1}; EC=2.8.3.- {ECO:0000313|EMBL:KFC68073.1};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
3-oxoacid CoA-transferase subunit A (EC:2.8.3.6); K01031 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003042BA9
scnpilot_solids2_trim150_scaffold_559_curated_4
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1615..2409
DNA (795bp) protein (265aa)
Pca regulon regulatory protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FFD2_9RHIZ
Pca regulon regulatory protein {ECO:0000313|EMBL:CCV10724.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
IclR family transcriptional regulator; K02624 IclR family transcriptional regulator, pca regulon regulatory protein
scnpilot_solids2_trim150_scaffold_559_curated_5
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2434..3912)
DNA (1479bp) protein (493aa)
D-mannonate oxidoreductase {ECO:0000313|EMBL:EPX82577.1}; EC=1.1.1.57 {ECO:0000313|EMBL:EPX82577.1};; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
uxuB; D-mannonate oxidoreductase (EC:1.1.1.57); K00040 fructuronate reductase [EC:1.1.1.57]
D-mannonate oxidoreductase n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QSJ7_9RHOB
scnpilot_solids2_trim150_scaffold_559_curated_6
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3926..5251)
DNA (1326bp) protein (442aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
UPI0003CE1E02 related cluster n=1 Tax=unknown RepID=UPI0003CE1E02
xylose isomerase
scnpilot_solids2_trim150_scaffold_559_curated_7
unknown

Not on your lists

comp(5471..5707)
DNA (237bp) protein (79aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_559_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5981..7024
DNA (1044bp) protein (348aa)
Purine nucleoside permease n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z1W3_9RHIZ
Purine nucleoside permease {ECO:0000313|EMBL:EIM30205.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
putative purine nucleoside permease protein
scnpilot_solids2_trim150_scaffold_559_curated_9
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7051..8508)
DNA (1458bp) protein (486aa)
xylulokinase; K00854 xylulokinase [EC:2.7.1.17]
Xylulokinase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y2X7_MESOW
Xylulokinase {ECO:0000313|EMBL:AEH84944.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
scnpilot_solids2_trim150_scaffold_559_curated_10
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8602..9186)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C1T4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM75786.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_559_curated_11
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9321..10079
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FE8_MESSB
Short-chain dehydrogenase {ECO:0000313|EMBL:KIF66113.1}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
short-chain dehydrogenase/reductase SDR
scnpilot_solids2_trim150_scaffold_559_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10081..10614)
DNA (534bp) protein (178aa)
Cupin domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6V3_9RHIZ
Cupin domain-containing protein {ECO:0000313|EMBL:EYR83624.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
2,4'-dihydroxyacetophenone dioxygenase
scnpilot_solids2_trim150_scaffold_559_curated_13
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10632..11660)
DNA (1029bp) protein (343aa)
ABC transporter permease protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P134_9RHOB
ABC transporter permease protein {ECO:0000313|EMBL:EAV41219.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_559_curated_14
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11672..12538)
DNA (867bp) protein (289aa)
ABC transporter permease n=1 Tax=Wenxinia marina RepID=UPI00037849AB
ABC transporter permease {ECO:0000313|EMBL:KGT75335.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
putative permease component of ABC transporter; K01997 branched-chain amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_559_curated_15
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12543..13250)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI000375B13A
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGJ10617.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
branched-chain amino acid transport ATP-binding protein LivF; K01996 branched-chain amino acid transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_559_curated_16
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13247..13963)
DNA (717bp) protein (239aa)
Putative branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XMW0_VARPD
putative branched-chain amino acid ABC transporter, ATP-binding protein
Putative ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDX35323.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
scnpilot_solids2_trim150_scaffold_559_curated_17

Not on your lists

comp(14036..15334)
DNA (1299bp) protein (433aa)
Branched-chain amino acid ABC transporter, substrate-binding protein n=2 Tax=uncultured bacterium RepID=C6KVE9_9BACT
Branched-chain amino acid ABC transporter, substrate-binding protein {ECO:0000313|EMBL:BAH89946.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative branched-chain amino acid ABC transporter substrate-binding protein
scnpilot_solids2_trim150_scaffold_559_curated_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15550..16131
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Sulfobacillus thermosulfidooxidans RepID=UPI000374804B
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
scnpilot_solids2_trim150_scaffold_559_curated_19
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16153..18180)
DNA (2028bp) protein (676aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HII1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESW86757.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
diguanylate cyclase
scnpilot_solids2_trim150_scaffold_559_curated_20
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18422..19465
DNA (1044bp) protein (348aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HYG7_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK54225.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_559_curated_21
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19643..19915
DNA (273bp) protein (91aa)
Mlr7483 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q985X7_RHILO
NADH-ubiquinone oxidoreductase chain E protein {ECO:0000313|EMBL:AID28799.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_559_curated_22
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20001..21299
DNA (1299bp) protein (433aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGV5_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH08485.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_559_curated_23
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21694..23985
DNA (2292bp) protein (764aa)
CRISPR-associated helicase, Cas3 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR90_NITWN
CRISPR-associated helicase Cas3; K07012
CRISPR-associated helicase, Cas3 family {ECO:0000313|EMBL:ABA05201.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids2_trim150_scaffold_559_curated_24
unknown

Not on your lists

24002..24244
DNA (243bp) protein (81aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_559_curated_25
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24301..24993
DNA (693bp) protein (231aa)
CRISPR-associated protein, Csd5d family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR91_NITWN
CRISPR-associated Csd1 family protein
CRISPR-associated protein, Csd5d family {ECO:0000313|EMBL:ABA05200.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids2_trim150_scaffold_559_curated_26
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24990..26783
DNA (1794bp) protein (598aa)
CRISPR-associated protein, Csd1 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR92_NITWN
CRISPR-associated Csd1 family protein
CRISPR-associated protein, Csd1 family {ECO:0000313|EMBL:ABA05199.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids2_trim150_scaffold_559_curated_27
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26783..27736
DNA (954bp) protein (318aa)
CRISPR-associated protein, Csd2 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR93_NITWN
CRISPR-associated Csh2 family protein
CRISPR-associated protein, Csd2 family {ECO:0000313|EMBL:ABA05198.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids2_trim150_scaffold_559_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27741..28409
DNA (669bp) protein (223aa)
CRISPR-associated protein Cas4 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CKZ8_9RHIZ
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:EYR78098.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07464 putative RecB family exonuclease
scnpilot_solids2_trim150_scaffold_559_curated_29
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28406..29440
DNA (1035bp) protein (345aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR95_NITWN
hypothetical protein; K15342 CRISP-associated protein Cas1
scnpilot_solids2_trim150_scaffold_559_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29443..29733
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQF5_9RHIZ
hypothetical protein
Displaying items 1-30 of 32 in total

View Taxonomy