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scnpilot_solids2_trim150_scaffold_1111_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1111_curated_1
unknown

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104..487
DNA (384bp) protein (128aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1111_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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484..750
DNA (267bp) protein (89aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; Flags: Fragment;; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
DNA polymerase III subunit alpha; K14162 error-prone DNA polymerase [EC:2.7.7.7]
DNA polymerase III subunit alpha (Fragment) n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B907_RHIRD
scnpilot_solids2_trim150_scaffold_1111_curated_3
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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755..937
DNA (183bp) protein (61aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
DNA polymerase III subunit alpha (Fragment) n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B907_RHIRD
DNA-directed DNA polymerase III PolC
scnpilot_solids2_trim150_scaffold_1111_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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886..1089
DNA (204bp) protein (68aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; Flags: Fragment;; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
DNA polymerase n=1 Tax=Hoeflea sp. 108 RepID=UPI000376D5D2
DNA-directed DNA polymerase III PolC
scnpilot_solids2_trim150_scaffold_1111_curated_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1057..1278)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFQ4_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64943.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_1111_curated_6
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1349..3781)
DNA (2433bp) protein (811aa)
UPF0753 protein XAPC_603 n=1 Tax=Xanthomonas axonopodis pv. punicae str. LMG 859 RepID=H1XCI2_9XANT
UPF0753 protein XAPC_603 {ECO:0000256|HAMAP-Rule:MF_01871}; TaxID=1085630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. punicae str. LMG 859.;"
hypothetical protein; K09822 hypothetical protein
scnpilot_solids2_trim150_scaffold_1111_curated_7
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3807..5375)
DNA (1569bp) protein (523aa)
nuoL3; NADH-ubiquinone/plastoquinone (complex I) (EC:1.6.5.3); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3]
oxidoreductase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00036D0207
Oxidoreductase {ECO:0000313|EMBL:AJC44838.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
scnpilot_solids2_trim150_scaffold_1111_curated_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5469..6359
DNA (891bp) protein (297aa)
Transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5N3_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EIL94774.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LysR family transcriptional regulator; K03717 LysR family transcriptional regulator, transcriptional activator of nhaA
scnpilot_solids2_trim150_scaffold_1111_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6860..7531)
DNA (672bp) protein (224aa)
Putative transposase n=2 Tax=Sphingomonas sp. SKA58 RepID=Q1NBT8_9SPHN
putative transposase for insertion sequence element
Transposase {ECO:0000313|EMBL:KAJ32432.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
scnpilot_solids2_trim150_scaffold_1111_curated_10
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9190..9639)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003738571
UspA domain-containing protein
UspA domain-containing protein {ECO:0000313|EMBL:ADV11882.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
scnpilot_solids2_trim150_scaffold_1111_curated_11
unknown

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comp(9752..9988)
DNA (237bp) protein (79aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1111_curated_12
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10126..11382
DNA (1257bp) protein (419aa)
Major facilitator superfamily protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYZ1_9BRAD
Major facilitator superfamily protein {ECO:0000313|EMBL:EAQ34794.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
major facilitator transporter; K02575 MFS transporter, NNP family, nitrate/nitrite transporter
scnpilot_solids2_trim150_scaffold_1111_curated_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11410..15186
DNA (3777bp) protein (1259aa)
Respiratory nitrate reductase subunit alpha NarG n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B455_9RHIZ
respiratory nitrate reductase subunit alpha NarG
Respiratory nitrate reductase subunit alpha NarG {ECO:0000313|EMBL:AGK58304.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
scnpilot_solids2_trim150_scaffold_1111_curated_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15183..16715
DNA (1533bp) protein (511aa)
Nitrate reductase A subunit beta n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BDU8_9RHIZ
narH; nitrate reductase A subunit beta
Nitrate reductase A subunit beta {ECO:0000313|EMBL:AGK58305.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
scnpilot_solids2_trim150_scaffold_1111_curated_15
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16726..17364
DNA (639bp) protein (213aa)
Nitrate reductase molybdenum cofactor assembly chaperone n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BCP6_9RHIZ
nitrate reductase molybdenum cofactor assembly chaperone
Nitrate reductase molybdenum cofactor assembly chaperone {ECO:0000313|EMBL:AGK58306.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
scnpilot_solids2_trim150_scaffold_1111_curated_16
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17380..18099
DNA (720bp) protein (240aa)
Respiratory nitrate reductase subunit gamma n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7R5_9RHIZ
respiratory nitrate reductase subunit gamma
Respiratory nitrate reductase subunit gamma {ECO:0000313|EMBL:AGK58307.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
scnpilot_solids2_trim150_scaffold_1111_curated_17
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18096..18815
DNA (720bp) protein (240aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B5K8_9RHIZ
PpiC-type peptidyl-prolyl cis-trans isomerase
scnpilot_solids2_trim150_scaffold_1111_curated_18
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18873..19145
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCU3_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB66466.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Displaying 18 items

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