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scnpilot_solids2_trim150_scaffold_160_curated

Search features with annotation key words

Displaying items 31-60 of 220 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_160_curated_31
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27596..30880)
DNA (3285bp) protein (1095aa)
helicase n=1 Tax=Rhizobium loti RepID=UPI000376821F
DNA/RNA helicase, superfamily II
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:AGB43835.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
scnpilot_solids2_trim150_scaffold_160_curated_32
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31657..32379)
DNA (723bp) protein (241aa)
phbB; acetoacetyl-CoA reductase (EC:1.1.1.36); K00023 acetoacetyl-CoA reductase [EC:1.1.1.36]
Acetoacetyl-CoA reductase n=1 Tax=Rhodobacter capsulatus B6 RepID=V8GVG1_RHOCA
Acetoacetyl-CoA reductase {ECO:0000313|EMBL:EZQ14384.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
scnpilot_solids2_trim150_scaffold_160_curated_33
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32480..33667)
DNA (1188bp) protein (396aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N3X4_9RHIZ
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EKF18968.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
scnpilot_solids2_trim150_scaffold_160_curated_34
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33945..34547
DNA (603bp) protein (201aa)
polyhydroxyalkanoate synthesis repressor PhaR n=1 Tax=Hoeflea sp. 108 RepID=UPI000381A86C
Polyhydroxyalkanoate synthesis repressor PhaR {ECO:0000313|EMBL:EHK58317.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
polyhydroxyalkanoate synthesis repressor PhaR
scnpilot_solids2_trim150_scaffold_160_curated_35
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34556..36139)
DNA (1584bp) protein (528aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F98F50
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:KJS09310.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
scnpilot_solids2_trim150_scaffold_160_curated_36
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36172..36573)
DNA (402bp) protein (134aa)
Membrane protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FGW9_9RHIZ
Membrane protein {ECO:0000313|EMBL:ESX68779.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_37
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(36707..36847)
DNA (141bp) protein (47aa)
50S ribosomal protein L32 n=3 Tax=Mesorhizobium RepID=G6YDU4_9RHIZ
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
scnpilot_solids2_trim150_scaffold_160_curated_38
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37041..37760)
DNA (720bp) protein (240aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-]
peptidoglycan transglycosylase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00037601A5
scnpilot_solids2_trim150_scaffold_160_curated_39
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37780..38844
DNA (1065bp) protein (355aa)
polyprenyl synthetase; K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
Polyprenyl synthetase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7XZE7_MESOW
Polyprenyl synthetase {ECO:0000313|EMBL:AEH85873.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
scnpilot_solids2_trim150_scaffold_160_curated_40
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38852..39760)
DNA (909bp) protein (303aa)
UPI0003CF9AA4 related cluster n=1 Tax=unknown RepID=UPI0003CF9AA4
Lytic transglycosylase {ECO:0000313|EMBL:CDX24986.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
soluble lytic murein transglycosylase-like protein
scnpilot_solids2_trim150_scaffold_160_curated_41
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39714..40967)
DNA (1254bp) protein (418aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
UPI0003CE8A48 related cluster n=1 Tax=unknown RepID=UPI0003CE8A48
scnpilot_solids2_trim150_scaffold_160_curated_42
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41162..41947
DNA (786bp) protein (262aa)
3-hydroxybutyrate dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
UPI0003CDDDBC related cluster n=1 Tax=unknown RepID=UPI0003CDDDBC
Cytochrome C biogenesis protein CcmE {ECO:0000313|EMBL:ESY63475.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
scnpilot_solids2_trim150_scaffold_160_curated_43
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42161..42757)
DNA (597bp) protein (199aa)
Transcriptional regulator n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FG43_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:CCV11019.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_160_curated_44
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43162..44292
DNA (1131bp) protein (377aa)
RND family efflux transporter, MFP subunit n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KFT0_MESAW
RND family efflux transporter, MFP subunit
Hemolysin D {ECO:0000313|EMBL:ESY79632.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
scnpilot_solids2_trim150_scaffold_160_curated_45
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44296..47472
DNA (3177bp) protein (1059aa)
acriflavin resistance protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000378B681
Acriflavin resistance protein {ECO:0000313|EMBL:CCV11024.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
acriflavin resistance protein
scnpilot_solids2_trim150_scaffold_160_curated_46
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47780..47938
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7Q5W7_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EHJ46904.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_47
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48003..48959)
DNA (957bp) protein (319aa)
oxidoreductase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DFEFEF
Oxidoreductase {ECO:0000313|EMBL:ESX68823.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_48

Not on your lists

49059..49949
DNA (891bp) protein (297aa)
Transcriptional regulator n=1 Tax=uncultured bacterium HF130_12L15 RepID=E0XPP0_9BACT
Transcriptional regulator {ECO:0000313|EMBL:ADI16381.1}; TaxID=710815 species="Bacteria; environmental samples.;" source="uncultured bacterium HF130_12L15.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_160_curated_49
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49934..51109)
DNA (1176bp) protein (392aa)
membrane protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030CD8B4
Major facilitator superfamily protein {ECO:0000313|EMBL:EHK58341.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
fucose permease
scnpilot_solids2_trim150_scaffold_160_curated_50
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51205..52383)
DNA (1179bp) protein (393aa)
peptidase M24; K01271 Xaa-Pro dipeptidase [EC:3.4.13.9]
UPI0003CEDE9A related cluster n=1 Tax=unknown RepID=UPI0003CEDE9A
X-Pro dipeptidase {ECO:0000313|EMBL:ESW78037.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;"
scnpilot_solids2_trim150_scaffold_160_curated_51
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52555..56031)
DNA (3477bp) protein (1159aa)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
pyruvate carboxylase; K01958 pyruvate carboxylase [EC:6.4.1.1]
UPI0003CF3780 related cluster n=1 Tax=unknown RepID=UPI0003CF3780
scnpilot_solids2_trim150_scaffold_160_curated_52
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56206..57309)
DNA (1104bp) protein (368aa)
Extracellular ligand-binding receptor n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BS30_9RHIZ
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EIM72382.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_160_curated_53
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57469..57822)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BS31_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM72383.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_54
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57833..58558)
DNA (726bp) protein (242aa)
General L-amino acid ABC transporter ATP-binding protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11D28_MESSB
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
General L-amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:ABG64697.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids2_trim150_scaffold_160_curated_55
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58555..59577)
DNA (1023bp) protein (341aa)
ABC transporter n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BS33_9RHIZ
ABC transporter {ECO:0000313|EMBL:EIM72385.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_160_curated_56
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59577..61028)
DNA (1452bp) protein (484aa)
Inner-membrane translocator n=1 Tax=Nitratireductor indicus C115 RepID=K2P3T3_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:EKF42031.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_160_curated_57
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61028..61954)
DNA (927bp) protein (309aa)
Inner-membrane translocator n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BQ49_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:EIM71701.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_160_curated_58
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62277..63341)
DNA (1065bp) protein (355aa)
4-hydroxyproline epimerase {ECO:0000313|EMBL:CDX25327.1}; EC=5.1.1.8 {ECO:0000313|EMBL:CDX25327.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hydroxyproline-2-epimerase; K12658 4-hydroxyproline epimerase [EC:5.1.1.8]
Hydroxyproline-2-epimerase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGK1_9RHIZ
scnpilot_solids2_trim150_scaffold_160_curated_59
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63345..64592)
DNA (1248bp) protein (416aa)
FAD dependent oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
UPI0003D0416A related cluster n=1 Tax=unknown RepID=UPI0003D0416A
D-amino acid dehydrogenase {ECO:0000313|EMBL:ESZ25603.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
scnpilot_solids2_trim150_scaffold_160_curated_60
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64622..65533)
DNA (912bp) protein (304aa)
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
dihydrodipicolinate synthase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FB2ADE
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:EJN05537.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
Displaying items 31-60 of 220 in total

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