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scnpilot_solids2_trim150_scaffold_616_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_616_curated_1
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1287
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00035F3A4B
Histidine kinase {ECO:0000313|EMBL:AHG39463.1}; TaxID=1357279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" source="Pseudomonas syringae CC1557.;"
GAF domain/GGDEF domain/EAL domain-containing protein
scnpilot_solids2_trim150_scaffold_616_curated_2
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1409..2611)
DNA (1203bp) protein (401aa)
Aspartate aminotransferase {ECO:0000313|EMBL:KFG69221.1}; EC=2.6.1.1 {ECO:0000313|EMBL:KFG69221.1};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
class I and II aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1]
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPM3_9RHIZ
scnpilot_solids2_trim150_scaffold_616_curated_3
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2724..3713
DNA (990bp) protein (330aa)
Putative exported protein n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4XWN6_ALCXX
hypothetical protein
LacI family transcriptional regulator {ECO:0000313|EMBL:AIR52224.1}; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans C54.;"
scnpilot_solids2_trim150_scaffold_616_curated_4
unknown

Not on your lists

3930..4184
DNA (255bp) protein (85aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_616_curated_5
bacterium YEK0313, Bacteria

Not on your lists

comp(4313..5263)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GHH6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:CEJ10719.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_616_curated_6
bacterium YEK0313, Bacteria

Not on your lists

5378..7396
DNA (2019bp) protein (673aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002EDE3DB
Putative multidrug export ATP-binding/permease protein {ECO:0000313|EMBL:CEJ10202.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
scnpilot_solids2_trim150_scaffold_616_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7502..8527
DNA (1026bp) protein (342aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000381ED08
Cationic amino acid ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:KFC64046.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
extracellular solute-binding protein; K09969 general L-amino acid transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_616_curated_8
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8485..9006
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00037C2800
hypothetical protein; K09768 hypothetical protein
UPF0178 protein Mpop_5221 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
scnpilot_solids2_trim150_scaffold_616_curated_9
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9010..9258)
DNA (249bp) protein (83aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSA6_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA04835.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids2_trim150_scaffold_616_curated_10
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9242..9484)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YA90_THIV6
hypothetical protein
Tax=CG_Rhodof_03
scnpilot_solids2_trim150_scaffold_616_curated_11
bacterium YEK0313, Bacteria

Not on your lists

comp(9527..11134)
DNA (1608bp) protein (536aa)
Peptide chain release factor 3 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM33_9RHIZ
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
peptide chain release factor 3; K02837 peptide chain release factor 3
scnpilot_solids2_trim150_scaffold_616_curated_12
unknown

Not on your lists

comp(11194..11436)
DNA (243bp) protein (81aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_616_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11551..12645)
DNA (1095bp) protein (365aa)
hypothetical protein; K01144 exodeoxyribonuclease V [EC:3.1.11.5]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F2A21F
RecD-like DNA helicase {ECO:0000313|EMBL:KFC74002.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_616_curated_14
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12739..15357
DNA (2619bp) protein (873aa)
excinuclease ABC subunit B n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000318A431
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B
scnpilot_solids2_trim150_scaffold_616_curated_15
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15513..15869
DNA (357bp) protein (119aa)
tRNA-binding protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036679D3
Export-related chaperone CsaA {ECO:0000313|EMBL:GAO38123.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
csaA; secretion chaperone CsaA
scnpilot_solids2_trim150_scaffold_616_curated_16
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16198..17607)
DNA (1410bp) protein (470aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
integral membrane sensor signal transduction histidine kinase; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
Signal transduction histidine kinase n=1 Tax=Microvirga sp. WSM3557 PF0_9RHIZ">RepID=I4YPF0_9RHIZ
scnpilot_solids2_trim150_scaffold_616_curated_17
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17604..18314)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037EF3B6
Chemotaxis protein CheY {ECO:0000313|EMBL:KFG69263.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
two component transcriptional regulator; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR
scnpilot_solids2_trim150_scaffold_616_curated_18
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18311..18820)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031DE015
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ACA20293.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_616_curated_19
bacterium YEK0313, Bacteria

Not on your lists

19030..19917
DNA (888bp) protein (296aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
branched-chain amino acid aminotransferase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000375C9A4
Branched-chain-amino-acid aminotransferase {ECO:0000313|EMBL:CEJ14437.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
scnpilot_solids2_trim150_scaffold_616_curated_20
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20256..20519
DNA (264bp) protein (88aa)
Transcriptional regulator, XRE family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UPX7_METS4
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACA15176.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_616_curated_21
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20606..22312
DNA (1707bp) protein (569aa)
Sulphate transporter n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IPP8_METNO
Sulfate transporter/antisigma-factor antagonist domain-containing protein {ECO:0000313|EMBL:AJD46145.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
sulfate transporter; K03321 sulfate permease, SulP family
scnpilot_solids2_trim150_scaffold_616_curated_22
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22333..23058)
DNA (726bp) protein (242aa)
Regulatory protein TetR n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UA86_METS4
regulatory protein TetR
Regulatory protein TetR {ECO:0000313|EMBL:ACA15432.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_616_curated_23
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23134..23574)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00036DA589
Uncharacterized protein {ECO:0000313|EMBL:EKM98778.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_616_curated_24
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23576..24397)
DNA (822bp) protein (274aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
pyrroline-5-carboxylate reductase; K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000318BBD4
scnpilot_solids2_trim150_scaffold_616_curated_25
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24417..24875)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPE5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG69268.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_616_curated_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25484..25738)
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2ISF6_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD08854.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
scnpilot_solids2_trim150_scaffold_616_curated_27
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25780..26697
DNA (918bp) protein (306aa)
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-]
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Prolipoprotein diacylglyceryl transferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3K0_STAND
scnpilot_solids2_trim150_scaffold_616_curated_28
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26694..27788
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQK9_METS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA17695.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_616_curated_29
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27807..28601
DNA (795bp) protein (265aa)
Uncharacterized protein, YfiH family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPE1_9RHIZ
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein; K05810 conserved hypothetical protein
scnpilot_solids2_trim150_scaffold_616_curated_30
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28613..29335)
DNA (723bp) protein (241aa)
Short chain dehydrogenase n=1 Tax=Oceanibaculum indicum P24 RepID=K2J5B6_9PROT
Short chain dehydrogenase {ECO:0000313|EMBL:EKE78211.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
short-chain dehydrogenase/reductase SDR
Displaying items 1-30 of 32 in total

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