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scnpilot_solids2_trim150_scaffold_1190_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1190_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121..1593
DNA (1473bp) protein (491aa)
cysteine desulfarase n=1 Tax=Kaistia granuli RepID=UPI000374BC87
Cysteine desulfurase activator complex subunit SufB {ECO:0000313|EMBL:KFC68925.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FeS assembly protein SufB; K09014 Fe-S cluster assembly protein SufB
scnpilot_solids2_trim150_scaffold_1190_curated_2
unknown

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1642..1857
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1190_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1874..2626
DNA (753bp) protein (251aa)
FeS assembly ATPase SufC n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZT9_9RHIZ
FeS assembly ATPase SufC {ECO:0000313|EMBL:KFC68924.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sufC; FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein
scnpilot_solids2_trim150_scaffold_1190_curated_4
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2634..3953
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EE2759
FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD
FeS assembly protein SufD {ECO:0000313|EMBL:ACL60674.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_1190_curated_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3950..5185
DNA (1236bp) protein (412aa)
SufS subfamily cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Cysteine desulfurase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVR8_RHOP2
scnpilot_solids2_trim150_scaffold_1190_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5197..5580
DNA (384bp) protein (128aa)
FeS assembly SUF system protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UIV4_METS4
FeS assembly SUF system protein
Uncharacterized protein {ECO:0000313|EMBL:KFC68920.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_1190_curated_7
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5676..6053
DNA (378bp) protein (126aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZU6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG70403.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
FeS assembly scaffold SufA; K13628 iron-sulfur cluster assembly protein
scnpilot_solids2_trim150_scaffold_1190_curated_8
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6287..7375)
DNA (1089bp) protein (363aa)
Diguanylate cyclase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZ80_9BRAD
Diguanylate cyclase {ECO:0000313|EMBL:EAQ34710.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
diguanylate cyclase; K13590 diguanylate cyclase
scnpilot_solids2_trim150_scaffold_1190_curated_9
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7510..8889)
DNA (1380bp) protein (460aa)
DEAD/DEAH box helicase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00035F9189
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ACA18676.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_1190_curated_10
unknown

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comp(9108..9407)
DNA (300bp) protein (100aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1190_curated_11
Strongylocentrotus purpuratus, Strongylocentrotus, Echinoida, Euechinoidea, Echinodermata, Metazoa

Not on your lists

9574..10536
DNA (963bp) protein (321aa)
polynucleotide phosphorylase n=1 Tax=Metascardovia criceti RepID=UPI00035E1D71
similar to U1 small nuclear ribonucleoprotein polypeptide A; K11093 U1 small nuclear ribonucleoprotein 70kDa
Uncharacterized protein {ECO:0000313|EnsemblMetazoa:SPU_021366-tr}; TaxID=7668 species="Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus.;" source="Strongylocentrotus purpuratus (Purple sea urchin).;"
scnpilot_solids2_trim150_scaffold_1190_curated_12
unknown

Not on your lists

comp(10615..10788)
DNA (174bp) protein (58aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1190_curated_13
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10879..11391)
DNA (513bp) protein (171aa)
Putative transcriptional regulatory protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ERI4_BRASB
transcriptional regulator
Putative transcriptional regulatory protein {ECO:0000313|EMBL:ABQ38778.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
scnpilot_solids2_trim150_scaffold_1190_curated_14
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11486..12031
DNA (546bp) protein (182aa)
Putative pyrimidine reductase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z2K2_9BRAD
Riboflavin biosynthesis protein RibD {ECO:0000313|EMBL:ETR77108.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
putative pyrimidine reductase
scnpilot_solids2_trim150_scaffold_1190_curated_15
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12041..12718
DNA (678bp) protein (226aa)
Glutathione S-transferase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S0K1_9SPHN
glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:AGH49515.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
scnpilot_solids2_trim150_scaffold_1190_curated_16
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12720..13073
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IJU9_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL59962.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_1190_curated_17
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13358..14260
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IXE4_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL63185.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_1190_curated_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14415..16520
DNA (2106bp) protein (702aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
DNA topoisomerase IV subunit B (EC:5.99.1.3); K02622 topoisomerase IV subunit B [EC:5.99.1.-]
DNA topoisomerase 4 subunit B n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z000_9RHIZ
scnpilot_solids2_trim150_scaffold_1190_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16890..18299)
DNA (1410bp) protein (470aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glutamine synthetase, type I; K01915 glutamine synthetase [EC:6.3.1.2]
glutamine synthetase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034A389A
scnpilot_solids2_trim150_scaffold_1190_curated_20
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18375..18482)
DNA (108bp) protein (36aa)
Nitrogen regulatory protein PII n=2 Tax=Pseudovibrio RepID=G8PJV0_PSEUV
glnB; Nitrogen regulatory protein PII; K04751 nitrogen regulatory protein P-II 1
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EEA96961.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
Displaying 20 items

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