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scnpilot_solids2_trim150_scaffold_1123_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1123_curated_1
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..2026
DNA (2025bp) protein (675aa)
multidrug transporter n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037017B9
transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
Tax=BJP_IG2103_Rhodocyclales_63_50
scnpilot_solids2_trim150_scaffold_1123_curated_2
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2066..2596
DNA (531bp) protein (177aa)
cupin n=1 Tax=Ruegeria conchae RepID=UPI000237904C
Cupin {ECO:0000313|EMBL:EWY40542.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
cupin
scnpilot_solids2_trim150_scaffold_1123_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2632..3249
DNA (618bp) protein (206aa)
Glutathione S-transferase-like protein {ECO:0000313|EMBL:KFC67488.1}; EC=2.5.1.18 {ECO:0000313|EMBL:KFC67488.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Glutathione S-transferase domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IS64_METNO
glutathione S-transferase
scnpilot_solids2_trim150_scaffold_1123_curated_4
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3421..4038
DNA (618bp) protein (206aa)
Cold shock protein CspB n=1 Tax=Rhodovulum sp. PH10 RepID=J5PCZ1_9RHOB
Cold shock protein CspB {ECO:0000313|EMBL:EJW09867.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
scnpilot_solids2_trim150_scaffold_1123_curated_5
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4067..4600
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M2A8_METRJ
Uncharacterized protein {ECO:0000313|EMBL:GAN48447.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
hypothetical protein; K09005 hypothetical protein
scnpilot_solids2_trim150_scaffold_1123_curated_6
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4603..5757
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00030094B3
class V aminotransferase
Aminotransferase class V {ECO:0000313|EMBL:ACA18152.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_1123_curated_7
bacterium YEK0313, Bacteria

Not on your lists

comp(5770..6534)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI00035FD5CC
Uncharacterized protein {ECO:0000313|EMBL:CEJ11420.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
extensin family protein
scnpilot_solids2_trim150_scaffold_1123_curated_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6774..7946)
DNA (1173bp) protein (391aa)
Isovaleryl-CoA dehydrogenase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RSU0_9BRAD
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:ETR76775.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
isovaleryl-CoA dehydrogenase
scnpilot_solids2_trim150_scaffold_1123_curated_9
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7997..8887)
DNA (891bp) protein (297aa)
Lysozyme M1 (1,4-beta-N-acetylmuramidase) n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKP7_9RHIZ
Glycoside hydrolase {ECO:0000313|EMBL:KFG68577.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
glycoside hydrolase family protein; K07273 lysozyme
scnpilot_solids2_trim150_scaffold_1123_curated_10
unknown

Not on your lists

comp(9208..9456)
DNA (249bp) protein (83aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1123_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9670..9996
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HSL5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC75004.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1123_curated_12
bacterium YEK0313, Bacteria

Not on your lists

comp(10312..10587)
DNA (276bp) protein (92aa)
Surface presentation of antigens (SPOA) protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UPJ1_METS4
Flagellar motor switch protein FliN {ECO:0000313|EMBL:CEJ12665.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
surface presentation of antigens (SPOA) protein; K02417 flagellar motor switch protein FliN/FliY
scnpilot_solids2_trim150_scaffold_1123_curated_13
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10694..11386
DNA (693bp) protein (231aa)
lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Me
lipoate-protein ligase B n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000373ECDB
scnpilot_solids2_trim150_scaffold_1123_curated_14
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11663..11941)
DNA (279bp) protein (93aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7]
Acylphosphatase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZV58_9PROT
Acylphosphatase {ECO:0000313|EMBL:EHM03119.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
scnpilot_solids2_trim150_scaffold_1123_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11965..13986)
DNA (2022bp) protein (674aa)
carbamoyl-phosphate synthase L chain ATP-binding; K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
acetyl-CoA carboxylase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E4A401
Acetyl/propionyl-CoA carboxylase, alpha subunit {ECO:0000313|EMBL:KFC67489.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_1123_curated_16
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14094..14411)
DNA (318bp) protein (106aa)
UPI0003CF8739 related cluster n=1 Tax=unknown RepID=UPI0003CF8739
Uncharacterized protein {ECO:0000313|EMBL:ESZ42706.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1123_curated_17
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14755..15690
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003043766
GloA protein {ECO:0000313|EMBL:BAQ45840.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
glyoxalase/bleomycin resistance protein/dioxygenase; K15975 glyoxalase family protein
scnpilot_solids2_trim150_scaffold_1123_curated_18
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15742..16371
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00036C5A7B
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ44878.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
phospholipase/carboxylesterase; K06999 phospholipase/carboxylesterase
scnpilot_solids2_trim150_scaffold_1123_curated_19
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16524..17522)
DNA (999bp) protein (333aa)
Putative Na+-dependent transporter n=1 Tax=Herbaspirillum sp. CF444 RepID=J3D3H1_9BURK
Sodium bile acid symporter family protein 3 {ECO:0000313|EMBL:EGP44529.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
sodium bile acid symporter family protein 3
scnpilot_solids2_trim150_scaffold_1123_curated_20
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17611..18483
DNA (873bp) protein (291aa)
LysR family transcription regulator protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IXG8_HERSS
LysR family transcription regulator protein
LysR family transcription regulator protein {ECO:0000313|EMBL:ADJ62043.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
scnpilot_solids2_trim150_scaffold_1123_curated_21
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18671..19288
DNA (618bp) protein (206aa)
tag; 3-methyladenine DNA glycosylase; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
3-methyladenine DNA glycosylase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GCY4_9BRAD
3-methyladenine DNA glycosylase {ECO:0000313|EMBL:BAL78621.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
scnpilot_solids2_trim150_scaffold_1123_curated_22
Asticcacaulis excentricus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19288..19368
DNA (81bp) protein (27aa)
Probable potassium transport system protein kup n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RMV0_ASTEC
potassium transporter; K03549 KUP system potassium uptake protein
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=573065 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 /; CB 48).;"
Displaying 22 items

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