ggKbase home page

scnpilot_solids2_trim150_scaffold_484_curated_30

Organism: solids_Rhizobiales_2

partial RP 19 / 55 MC: 1 BSCG 19 / 51 ASCG 9 / 38 MC: 1
Location: 31016..31570

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2ID36_BEII9 similarity UNIREF
DB: UNIREF100
  • Identity: 63.5
  • Coverage: 178.0
  • Bit_score: 220
  • Evalue 1.90e-54
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.5
  • Coverage: 174.0
  • Bit_score: 288
  • Evalue 6.10e-75
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 63.5
  • Coverage: 178.0
  • Bit_score: 220
  • Evalue 5.90e-55

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Bosea sp. LC85 → Bosea → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 555
ATGACGCCAACGTTTCGCGACAGCCTGCTCAAGGAAATTCCCAATCTGCGCGCCTTCGCCGCCTCGGTCTCGGGCTCGATCCAGCTCGCCGACGATCTGGTGCAGGATACGCTCGTGAAGGCCTGGGCGAATTCGGACAAGTTCCAGGAAGGCACCAGCATCCGCGCCTGGCTGTTCACGATCCTGCGCAACACCTACTACTCGCTCTACCGCAAGCGCGGCCGCGAGGTGCAGGACAGCGACGGCATCTATGCCGAGCGCCTCGCCTCGCATGGCGCGCAGGAGGGCCACATGGATTTCGTCGATTTCCGCAAGGCGCTCGCGCAACTGCCGGAGGAGCAGCGCGAGGTGCTGATCATGGTCGGCGCCTCCGGCCTGTCCTATGAGGAGGCGGCCGATATTTGCGGCGTGGCCATCGGCACCATCAAGAGCCGTGTCAACCGGGCACGGGTGAAGCTCGCCGAAATCCTGCAGATTTCGAGCGTGGACGATATCGGCCCCGACCGTCGCAGCGTGGCGGCGCTCGCCAGCGGCCTCGGTGACGGGTCCTCGTAA
PROTEIN sequence
Length: 185
MTPTFRDSLLKEIPNLRAFAASVSGSIQLADDLVQDTLVKAWANSDKFQEGTSIRAWLFTILRNTYYSLYRKRGREVQDSDGIYAERLASHGAQEGHMDFVDFRKALAQLPEEQREVLIMVGASGLSYEEAADICGVAIGTIKSRVNRARVKLAEILQISSVDDIGPDRRSVAALASGLGDGSS*