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scnpilot_solids2_trim150_scaffold_484_curated

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_484_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..536
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2Z1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC64131.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_484_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(553..1593)
DNA (1041bp) protein (347aa)
Ferredoxin--NADP reductase {ECO:0000256|HAMAP-Rule:MF_01685}; Short=FNR {ECO:0000256|HAMAP-Rule:MF_01685};; Short=Fd-NADP(+) reductase {ECO:0000256|HAMAP-Rule:MF_01685};; EC=1.18.1.2 {ECO:0000256|HAMAP-Rule:MF_01685};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Ferredoxin--NADP reductase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=FENR_BEII9
scnpilot_solids2_trim150_scaffold_484_curated_3
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1686..2006)
DNA (321bp) protein (107aa)
2Fe-2S ferredoxin n=1 Tax=Xanthobacteraceae RepID=UPI00037EF9D6
ferredoxin; K04755 ferredoxin, 2Fe-2S
2Fe-2S ferredoxin {ECO:0000313|EMBL:KFG68953.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
scnpilot_solids2_trim150_scaffold_484_curated_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2131..2457)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036B1C77
Histidine kinase {ECO:0000313|EMBL:KIZ39323.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Hpt domain-containing protein
scnpilot_solids2_trim150_scaffold_484_curated_5
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2781..8381
DNA (5601bp) protein (1867aa)
Antitoxin n=2 Tax=Labrenzia RepID=U7G7S1_9RHOB
Antitoxin {ECO:0000313|EMBL:ERP93839.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_484_curated_6
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8663..9280)
DNA (618bp) protein (206aa)
ABC transporter n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000372388C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB78998.1}; Flags: Precursor;; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
scnpilot_solids2_trim150_scaffold_484_curated_7
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9280..10614)
DNA (1335bp) protein (445aa)
ABC-type transport system involved in resistance to organic solvents, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW72_9RHIZ
ABC-type transport system involved in resistance to organic solvents, periplasmic component {ECO:0000313|EMBL:EIM28214.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter substrate-binding protein; K02067 putative ABC transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_484_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10699..11493)
DNA (795bp) protein (265aa)
ABC-type transport system involved in resistance to organic solvents, ATPase component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW71_9RHIZ
ABC-type transport system involved in resistance to organic solvents, ATPase component {ECO:0000313|EMBL:EIM28213.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter-like protein; K02065 putative ABC transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_484_curated_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11496..12626)
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F1DFE1
Putative integral membrane protein {ECO:0000313|EMBL:EIM28212.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein; K02066 putative ABC transport system permease protein
scnpilot_solids2_trim150_scaffold_484_curated_10
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12921..13667
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IHC4_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL59816.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_484_curated_11
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13838..14455)
DNA (618bp) protein (206aa)
Transcriptional regulator, XRE family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IBQ2_BEII9
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACB93774.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
scnpilot_solids2_trim150_scaffold_484_curated_12
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14563..15375)
DNA (813bp) protein (271aa)
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003193B2A
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:ADH89400.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_484_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15440..16420)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F146CB
RarD family protein {ECO:0000313|EMBL:KFC67109.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
scnpilot_solids2_trim150_scaffold_484_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16468..17247)
DNA (780bp) protein (260aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000367B3BB
Putative 3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:KFC67110.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_484_curated_15
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17427..18455
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQQ5_METS4
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFG69868.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_484_curated_16
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18466..18924
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UEV5_METS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA18631.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_484_curated_17
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19131..20630
DNA (1500bp) protein (500aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UEV6_METS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA18632.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_484_curated_18
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20646..21353)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003806E3D
Nickel-dependent hydrogenase b-type cytochrome subunit {ECO:0000313|EMBL:AHB48530.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
cytochrome B561
scnpilot_solids2_trim150_scaffold_484_curated_19
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21375..21815)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037FB59F
cytochrome C prime
Cytochrome c prime {ECO:0000313|EMBL:ADH89404.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_484_curated_20
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21924..24218)
DNA (2295bp) protein (765aa)
aldehyde oxidase/xanthine dehydrogenase; K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2]
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IJP7_METNO
CoxL protein {ECO:0000313|EMBL:BAQ49075.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
scnpilot_solids2_trim150_scaffold_484_curated_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24420..26249
DNA (1830bp) protein (610aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V656_9BRAD
two component sensor kinase
scnpilot_solids2_trim150_scaffold_484_curated_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26352..26789
DNA (438bp) protein (146aa)
Response regulator receiver protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MA7_RHOP5
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ABJ06927.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
scnpilot_solids2_trim150_scaffold_484_curated_23
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26786..27856
DNA (1071bp) protein (357aa)
Response regulator receiver n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IFU3_AZOC5
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:BAF89649.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
scnpilot_solids2_trim150_scaffold_484_curated_24
bacterium YEK0313, Bacteria

Not on your lists

comp(27955..28218)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EF46A5
Uncharacterized protein {ECO:0000313|EMBL:CEJ10462.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_484_curated_25
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28428..28772
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E554D1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB96797.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
scnpilot_solids2_trim150_scaffold_484_curated_26
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28958..29116)
DNA (159bp) protein (53aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003684A1A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB72961.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
scnpilot_solids2_trim150_scaffold_484_curated_27
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29275..29454
DNA (180bp) protein (60aa)
UPF0391 membrane protein Xaut_1725 n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=Y1725_XANP2
hypothetical protein
UPF0391 membrane protein Xaut_1725 {ECO:0000255|HAMAP-Rule:MF_01361}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_484_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29818..30606)
DNA (789bp) protein (263aa)
chemotaxis protein CheY n=1 Tax=Methylocystis parvus RepID=UPI00031620C0
DNA-directed RNA polymerase specialized sigma subunit {ECO:0000313|EMBL:KFC70893.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ECF subfamily RNA polymerase sigma-24 subunit
scnpilot_solids2_trim150_scaffold_484_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30819..31019
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC70892.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_484_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31016..31570
DNA (555bp) protein (185aa)
RNA polymerase sigma factor n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2ID36_BEII9
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Displaying items 1-30 of 39 in total

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