ggKbase home page

scnpilot_solids2_trim150_scaffold_960_curated_11

Organism: solids_Rhizobiales_2

partial RP 19 / 55 MC: 1 BSCG 19 / 51 ASCG 9 / 38 MC: 1
Location: comp(11914..12795)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma 70 n=1 Tax=Methylocystis parvus RepID=UPI00031E9B9E similarity UNIREF
DB: UNIREF100
  • Identity: 76.8
  • Coverage: 289.0
  • Bit_score: 448
  • Evalue 6.80e-123
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.6
  • Coverage: 291.0
  • Bit_score: 448
  • Evalue 7.30e-123
rpoH; sigma32-like transcription factor; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 75.6
  • Coverage: 291.0
  • Bit_score: 446
  • Evalue 4.70e-123

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Bradyrhizobium sp. LTSP849 → Bradyrhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 882
ATGACTACTGCTACGCTTCCCGCCGTTGGTACGGAAGGCAGCCTGTCGCGTTATATCGCCGAAATCCGGCGGTTTCCACTTCTTGAGCCGCAGCAGGAATATATGCTCGCCAAGCGTTTGCGCGAGCATGCCGATACCAGCGCCGCCCACAAGCTCATCACCTCGCATCTGCGTCTCGTGGTCAAGATCGCCATGGGCTATCGCGGCTATGGCCTGCCGGTCGGCGAGGTCGTGTCCGAGGGCAATATCGGCCTGATGCAGGCCGTCAAGCGCTTCGATCCGGAGCGCGGCTTCCGTCTCGCGACCTACGCGATGTGGTGGATCCGCGCCTCGATCCAGGAATACATCCTGCGCTCGTGGTCGCTGGTGAAGATGGGCACCACCGCCAACCAGAAGAAGCTGTTCTTCAACCTGCGCAAGGCCAAGAACCACATTTCCGCGCTCGAGGACGGCGATCTGCGCCCCGACCAGGTGCAGGTGATCGCCAAGCGCCTCGGCGTGCACGAGCACGAGGTCGTCGAGATGAACCGCAGGCTTGGCGGCGACAGTTCGCTGAACAGCCCGCTGCGCATCGATGGCGACGGCGAGTGGCAGGATACGCTGGTCGATGACGGCGCCAGCCAGGAAGCCCTGCTGATGGCGAGCGAGGAAAGCGGCAACCGCCGCACCGCGCTCGACGGCGCGCTCGGCCTGCTCAACCAGCGCGAGCGCCGCATCTTCGAGGCGCGCCGCCTGCTCGACGAGCCGCTGACGCTCGAAGCGCTGTCGGAGGAGTTCGGCGTGTCGCGCGAGCGCATCCGGCAGATCGAGGTGCGCGCCTACGAGAAGGTTCAGGCCGCCGTGCGCAGCAATGTCGCACGGCTGGAGCAAGCCGCCGCCTGA
PROTEIN sequence
Length: 294
MTTATLPAVGTEGSLSRYIAEIRRFPLLEPQQEYMLAKRLREHADTSAAHKLITSHLRLVVKIAMGYRGYGLPVGEVVSEGNIGLMQAVKRFDPERGFRLATYAMWWIRASIQEYILRSWSLVKMGTTANQKKLFFNLRKAKNHISALEDGDLRPDQVQVIAKRLGVHEHEVVEMNRRLGGDSSLNSPLRIDGDGEWQDTLVDDGASQEALLMASEESGNRRTALDGALGLLNQRERRIFEARRLLDEPLTLEALSEEFGVSRERIRQIEVRAYEKVQAAVRSNVARLEQAAA*