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scnpilot_solids2_trim150_scaffold_3822_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3822_curated_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..648)
DNA (648bp) protein (216aa)
Argininosuccinate synthase {ECO:0000256|SAAS:SAAS00214603}; EC=6.3.4.5 {ECO:0000256|SAAS:SAAS00009947};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ39_9GAMM
scnpilot_solids2_trim150_scaffold_3822_curated_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(677..1150)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTN0_9GAMM
putative redox protein, regulator of disulfide bond formation
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_3822_curated_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1147..1770)
DNA (624bp) protein (208aa)
Transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=M4NFG8_9GAMM
transcriptional regulator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_3822_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1777..2784)
DNA (1008bp) protein (336aa)
ornithine carbamoyltransferase (EC:2.1.3.9)
Ornithine carbamoyltransferase {ECO:0000313|EMBL:AGG88357.1}; EC=2.1.3.9 {ECO:0000313|EMBL:AGG88357.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ornithine carbamoyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEI4_9GAMM
scnpilot_solids2_trim150_scaffold_3822_curated_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3178..3702)
DNA (525bp) protein (175aa)
Putative outer membrane lipoprotein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5U5_9GAMM
Putative outer membrane lipoprotein {ECO:0000313|EMBL:EIL94836.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative outer membrane lipoprotein
scnpilot_solids2_trim150_scaffold_3822_curated_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3953..5326
DNA (1374bp) protein (458aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVL2_9GAMM
scnpilot_solids2_trim150_scaffold_3822_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5382..5816
DNA (435bp) protein (145aa)
SufE protein probably involved in Fe-S center assembly n=1 Tax=Rhodanobacter denitrificans RepID=M4NCI1_9GAMM
SufE protein probably involved in Fe-S center assembly
SufE protein probably involved in Fe-S center assembly {ECO:0000313|EMBL:AGG88354.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3822_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5972..7150)
DNA (1179bp) protein (393aa)
RNA polymerase-binding protein DksA n=2 Tax=Rhodanobacter denitrificans RepID=M4NEI0_9GAMM
RNA polymerase-binding protein DksA
RNA polymerase-binding protein DksA {ECO:0000313|EMBL:AGG88352.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3822_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7567..8514)
DNA (948bp) protein (316aa)
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
GTP cyclohydrolase FolE2 n=1 Tax=Rhodanobacter denitrificans RepID=I4WTM1_9GAMM
scnpilot_solids2_trim150_scaffold_3822_curated_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8628..9482)
DNA (855bp) protein (285aa)
Phytoene/squalene synthetase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5T9_9GAMM
Phytoene/squalene synthetase {ECO:0000313|EMBL:EIL94830.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phytoene/squalene synthetase
scnpilot_solids2_trim150_scaffold_3822_curated_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9479..10162)
DNA (684bp) protein (228aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Phosphoglycolate phosphatase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5T8_9GAMM
2-phosphoglycolate phosphatase
scnpilot_solids2_trim150_scaffold_3822_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10159..10860)
DNA (702bp) protein (234aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTL8_9GAMM
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3822_curated_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10953..11207)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQC7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01669.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_3822_curated_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11222..12553)
DNA (1332bp) protein (444aa)
N-ethylammeline chlorohydrolase n=1 Tax=Dyella ginsengisoli RepID=UPI00034D937B
cytosine deaminase-like metal-dependent hydrolase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_3822_curated_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12772..13254)
DNA (483bp) protein (161aa)
Elongation factor P n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5T4_9GAMM
translation elongation factor P
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 15 items

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