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scnpilot_solids2_trim150_scaffold_1825_curated

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1825_curated_1
Pseudomonas psychrotolerans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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402..1391
DNA (990bp) protein (330aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Pseudomonas psychrotolerans L19 RepID=H0JK95_9PSED
Transposase IS116/IS110/IS902 family protein {ECO:0000313|EMBL:EHK68480.1}; TaxID=1112217 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas psychrotolerans L19.;"
transposase IS116/IS110/IS902 family protein
scnpilot_solids2_trim150_scaffold_1825_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1459..3147)
DNA (1689bp) protein (563aa)
Putative aminopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NF86_9GAMM
putative aminopeptidase
Putative aminopeptidase {ECO:0000313|EMBL:AGG89540.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1825_curated_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3217..4992)
DNA (1776bp) protein (592aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NIQ4_9GAMM
diguanylate cyclase (GGDEF) domain-containing protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1825_curated_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4996..5304)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHI4_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1825_curated_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5864..6682)
DNA (819bp) protein (273aa)
Precorrin-3B methylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NPH4_9GAMM
precorrin-3B methylase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1825_curated_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6704..7480)
DNA (777bp) protein (259aa)
Membrane protease n=1 Tax=Rhodanobacter denitrificans RepID=I4WWU1_9GAMM
membrane protease subunit, stomatin/prohibitin
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1825_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7502..8905)
DNA (1404bp) protein (468aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD81_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97422.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
membrane-bound serine protease (ClpP class)
scnpilot_solids2_trim150_scaffold_1825_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9033..9488
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWU3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89549.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1825_curated_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9504..10349)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD84_9GAMM
Protein of unknown function (DUF3014)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1825_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10597..12237
DNA (1641bp) protein (547aa)
Putative transmembrane Na+/H+ antiport transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD88_9GAMM
Putative transmembrane Na+/H+ antiport transporter {ECO:0000313|EMBL:EIL97429.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Na+ antiporter
scnpilot_solids2_trim150_scaffold_1825_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12313..12948
DNA (636bp) protein (212aa)
Bacterial lipocalin n=1 Tax=Rhodanobacter denitrificans RepID=I4WWV1_9GAMM
bacterial lipocalin
Bacterial lipocalin {ECO:0000313|EMBL:AGG89557.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1825_curated_12
Simiduia agarivorans, Simiduia, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12917..13441)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Microbulbifer variabilis RepID=UPI000376AB6C
tRNA/rRNA methyltransferase SpoU
tRNA/rRNA methyltransferase SpoU {ECO:0000313|EMBL:AFU99214.1}; TaxID=1117647 species="Bacteria; Proteobacteria; Gammaproteobacteria; Simiduia.;" source="Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 /; SA1).;"
scnpilot_solids2_trim150_scaffold_1825_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13487..14884
DNA (1398bp) protein (466aa)
Metal-dependent phosphohydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4A2_9GAMM
Metal-dependent phosphohydrolase {ECO:0000313|EMBL:EIL94293.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
metal-dependent phosphohydrolase
scnpilot_solids2_trim150_scaffold_1825_curated_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14937..16214
DNA (1278bp) protein (426aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4A3_9GAMM
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EIL94294.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
diguanylate cyclase/phosphodiesterase
scnpilot_solids2_trim150_scaffold_1825_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16201..16968
DNA (768bp) protein (256aa)
ABC-type proline/glycine betaine transport system, ATPase component n=1 Tax=Rhodanobacter denitrificans RepID=M4NHK3_9GAMM
ABC-type proline/glycine betaine transport system, ATPase component
ABC-type proline/glycine betaine transport system, ATPase component {ECO:0000313|EMBL:AGG89562.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1825_curated_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16965..18455
DNA (1491bp) protein (497aa)
Glycine betaine/carnitine/choline-binding ABC transporter substrate-binding and permease component n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD93_9GAMM
periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1825_curated_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18512..19060
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W0V3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93094.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1825_curated_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19092..20105
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD96_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97437.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease
scnpilot_solids2_trim150_scaffold_1825_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20113..20763)
DNA (651bp) protein (217aa)
2'-5' RNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWW2_9GAMM
2'-5' RNA ligase
2'-5' RNA ligase {ECO:0000313|EMBL:AGG89567.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1825_curated_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20978..23059
DNA (2082bp) protein (694aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NLU6_9GAMM
diguanylate cyclase (GGDEF) domain-containing protein
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG90638.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1825_curated_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23067..23330)
DNA (264bp) protein (88aa)
DnaK suppressor protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWW3_9GAMM
DnaK suppressor protein
DnaK suppressor protein {ECO:0000313|EMBL:AGG89568.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1825_curated_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23504..25273
DNA (1770bp) protein (590aa)
Acyl-CoA dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA0_9GAMM
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EIL97441.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acyl-CoA dehydrogenase
scnpilot_solids2_trim150_scaffold_1825_curated_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25297..25710
DNA (414bp) protein (138aa)
OsmC-like protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA1_9GAMM
OsmC-like protein {ECO:0000313|EMBL:EIL97442.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative redox protein, regulator of disulfide bond formation
scnpilot_solids2_trim150_scaffold_1825_curated_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25879..26424
DNA (546bp) protein (182aa)
Cytochrome c oxidase subunit II n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA2_9GAMM
Cytochrome c oxidase subunit II {ECO:0000313|EMBL:EIL97443.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
heme/copper-type cytochrome/quinol oxidase, subunit 2
scnpilot_solids2_trim150_scaffold_1825_curated_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26427..27926
DNA (1500bp) protein (500aa)
Cytochrome c oxidase subunit I n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA3_9GAMM
Cytochrome c oxidase subunit I {ECO:0000313|EMBL:EIL97444.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
heme/copper-type cytochrome/quinol oxidase, subunit 1
scnpilot_solids2_trim150_scaffold_1825_curated_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27898..28515
DNA (618bp) protein (206aa)
Electron transport protein SCO1/SenC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA4_9GAMM
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:EIL97445.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems
scnpilot_solids2_trim150_scaffold_1825_curated_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28512..29123
DNA (612bp) protein (204aa)
Transmembrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWW9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89574.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1825_curated_28
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29304..29543)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WEC9_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids2_trim150_scaffold_1825_curated_29
Pseudomonas sp. GM55, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29718..30971)
DNA (1254bp) protein (418aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; Flags: Precursor;; TaxID=1144333 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM55.;"
alanine racemase; K01775 alanine racemase [EC:5.1.1.1]
Alanine racemase n=1 Tax=Pseudomonas sp. GM55 RepID=J3GTX5_9PSED
scnpilot_solids2_trim150_scaffold_1825_curated_30
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31024..33909)
DNA (2886bp) protein (962aa)
Putative TonB dependent receptor n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWS2_PSEUP
TonB-dependent receptor {ECO:0000313|EMBL:KGM54884.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
putative TonB dependent receptor; K02014 iron complex outermembrane recepter protein
Displaying items 1-30 of 34 in total

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