ggKbase home page

scnpilot_solids2_trim150_scaffold_1716_curated

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1716_curated_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..210
DNA (210bp) protein (70aa)
L-threonine 3-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053}; EC=1.1.1.103 {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
L-threonine 3-dehydrogenase (EC:1.1.1.103)
L-threonine 3-dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIU8_9GAMM
scnpilot_solids2_trim150_scaffold_1716_curated_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

347..4009
DNA (3663bp) protein (1221aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIU9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99390.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein involved in outer membrane biogenesis
scnpilot_solids2_trim150_scaffold_1716_curated_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4097..5296
DNA (1200bp) protein (400aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Rhodanobacter denitrificans RepID=I4WV84_9GAMM
scnpilot_solids2_trim150_scaffold_1716_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5363..6136)
DNA (774bp) protein (258aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Pseudouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND80_9GAMM
pseudouridine synthase family protein
scnpilot_solids2_trim150_scaffold_1716_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6244..7398)
DNA (1155bp) protein (385aa)
Outer membrane protein/peptidoglycan-associated (Lipo)protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WV86_9GAMM
outer membrane protein/peptidoglycan-associated (lipo)protein
Outer membrane protein/peptidoglycan-associated (Lipo)protein {ECO:0000313|EMBL:AGG88693.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1716_curated_6
unknown

Not on your lists

comp(7484..7699)
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1716_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7711..9162)
DNA (1452bp) protein (484aa)
2-methylcitrate dehydratase {ECO:0000313|EMBL:EIL99394.1}; EC=4.2.1.79 {ECO:0000313|EMBL:EIL99394.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-methylcitrate dehydratase (EC:4.2.1.79)
2-methylcitrate dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIV3_9GAMM
scnpilot_solids2_trim150_scaffold_1716_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9383..10126
DNA (744bp) protein (248aa)
Integral membrane protein, YjbE family n=1 Tax=Rhodanobacter denitrificans RepID=I4WV88_9GAMM
integral membrane protein, YjbE family
Integral membrane protein, YjbE family {ECO:0000313|EMBL:AGG88691.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1716_curated_9
unknown

Not on your lists

10268..10849
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00030787EE
scnpilot_solids2_trim150_scaffold_1716_curated_10
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10849..11133
DNA (285bp) protein (95aa)
Cro/Cl family transcriptional regulator n=1 Tax=Pseudomonas tolaasii RepID=UPI0003634733
Cro/Cl family transcriptional regulator {ECO:0000313|EMBL:KGE69442.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
XRE family transcriptional regulator; K07727 putative transcriptional regulator
scnpilot_solids2_trim150_scaffold_1716_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11130..12275)
DNA (1146bp) protein (382aa)
Citrate synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND76_9GAMM
2-methylcitrate synthase/citrate synthase II
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1716_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12404..13288)
DNA (885bp) protein (295aa)
methylisocitrate lyase (EC:4.1.3.30)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
2-methylisocitrate lyase n=1 Tax=Rhodanobacter denitrificans RepID=I4WV91_9GAMM
scnpilot_solids2_trim150_scaffold_1716_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13443..14756
DNA (1314bp) protein (438aa)
Sodium:dicarboxylate symporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW49_9GAMM
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:EIL91440.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Na+/H+ dicarboxylate symporter
scnpilot_solids2_trim150_scaffold_1716_curated_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14922..15020
DNA (99bp) protein (33aa)
Peroxiredoxin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW50_9GAMM
Peroxiredoxin {ECO:0000313|EMBL:EIL91441.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
peroxiredoxin
Displaying 14 items

View Taxonomy