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scnpilot_solids2_trim150_scaffold_1963_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1963_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..244)
DNA (243bp) protein (81aa)
Peptide chain release factor 2 n=1 Tax=Rhodanobacter denitrificans RepID=M4NDJ7_9GAMM
bacterial peptide chain release factor 2 (bRF-2)
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1963_curated_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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373..1839
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036C1D42
Copper oxidase {ECO:0000313|EMBL:AHX12676.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1963_curated_3
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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1836..3035
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D83F6C
chromate transporter; K07240 chromate transporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
scnpilot_solids2_trim150_scaffold_1963_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3040..4707)
DNA (1668bp) protein (556aa)
Asparagine synthase, glutamine-hydrolyzing {ECO:0000313|EMBL:AGG88798.1}; EC=6.3.5.4 {ECO:0000313|EMBL:AGG88798.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
asparagine synthase, glutamine-hydrolyzing (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Rhodanobacter denitrificans RepID=M4NGL3_9GAMM
scnpilot_solids2_trim150_scaffold_1963_curated_5
unknown

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comp(4799..4921)
DNA (123bp) protein (41aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1963_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4991..5356)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXT5_9GAMM
Protein of unknown function (DUF3478)
Uncharacterized protein {ECO:0000313|EMBL:AGG88797.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1963_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5451..7163)
DNA (1713bp) protein (571aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL4_9GAMM
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EIL99305.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_1963_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7160..8080)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99306.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1963_curated_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8083..10026)
DNA (1944bp) protein (648aa)
ABC transporter ATPase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL6_9GAMM
ABC transporter ATPase {ECO:0000313|EMBL:EIL99307.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3
scnpilot_solids2_trim150_scaffold_1963_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10206..10571
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99308.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1963_curated_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10666..11715
DNA (1050bp) protein (350aa)
Peptidylarginine deiminase-like protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8Y4_9GAMM
Peptidylarginine deiminase-like protein {ECO:0000313|EMBL:EIL95925.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
peptidylarginine deiminase-like enzyme
scnpilot_solids2_trim150_scaffold_1963_curated_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11817..12707
DNA (891bp) protein (297aa)
Putative amidohydrolase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSP3_9GAMM
putative amidohydrolase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1963_curated_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12842..14074
DNA (1233bp) protein (411aa)
Pheromone shutdown-related protein TraB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIM0_9GAMM
pheromone shutdown-related protein TraB
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1963_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14769..15365)
DNA (597bp) protein (199aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:AGG88757.1}; EC=2.7.8.5 {ECO:0000313|EMBL:AGG88757.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXZ8_9GAMM
scnpilot_solids2_trim150_scaffold_1963_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15438..16397)
DNA (960bp) protein (320aa)
UvrABC system protein C n=1 Tax=Rhodanobacter denitrificans RepID=M4NLZ1_9GAMM
Excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 15 items

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