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scnpilot_solids2_trim150_scaffold_2254_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2254_curated_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1332
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0R9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93060.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein; K11900 type VI secretion system protein ImpC
scnpilot_solids2_trim150_scaffold_2254_curated_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1456..1950
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0S0_9GAMM
hypothetical protein; K11903 type VI secretion system secreted protein Hcp
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2254_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2158..2946
DNA (789bp) protein (263aa)
Virulence protein SciE type n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0S1_9GAMM
Virulence protein SciE type {ECO:0000313|EMBL:EIL93062.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
sciE; hypothetical protein; K11898 type VI secretion system protein ImpE
scnpilot_solids2_trim150_scaffold_2254_curated_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2969..3472
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0S2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93063.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein; K11897 type VI secretion system protein ImpF
scnpilot_solids2_trim150_scaffold_2254_curated_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3478..5361
DNA (1884bp) protein (628aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0S3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93064.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein; K11896 type VI secretion system protein ImpG
scnpilot_solids2_trim150_scaffold_2254_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5325..6347
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0S4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93065.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein; K11895 type VI secretion system protein ImpH
scnpilot_solids2_trim150_scaffold_2254_curated_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6417..9164
DNA (2748bp) protein (916aa)
Type VI secretion ATPase, ClpV1 family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0S5_9GAMM
Type VI secretion ATPase, ClpV1 family protein {ECO:0000313|EMBL:EIL93066.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type VI secretion ATPase, ClpV1 family; K11907 type VI secretion system protein VasG
scnpilot_solids2_trim150_scaffold_2254_curated_8
unknown

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9222..10274
DNA (1053bp) protein (351aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2254_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10525..12147
DNA (1623bp) protein (541aa)
Flavodoxin/nitric oxide synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WKZ9_9GAMM
sulfite reductase, alpha subunit (flavoprotein)
Sulfite reductase, alpha subunit (Flavoprotein) {ECO:0000313|EMBL:AGG88258.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2254_curated_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12318..12857)
DNA (540bp) protein (180aa)
Acetyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WKZ6_9GAMM
acetyltransferase, ribosomal protein N-acetylase
Acetyltransferase, ribosomal protein N-acetylase {ECO:0000313|EMBL:AGG88261.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2254_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12870..13349)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WKZ5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88262.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2254_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13433..13771)
DNA (339bp) protein (113aa)
Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Rhodanobacter denitrificans RepID=M4NF81_9GAMM
competence protein ComEA-like protein with helix-hairpin-helix repeat region
Competence protein ComEA-like protein with helix-hairpin-helix repeat region {ECO:0000313|EMBL:AGG88263.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2254_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13986..15401
DNA (1416bp) protein (472aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5K1_9GAMM
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:EIL94742.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
scnpilot_solids2_trim150_scaffold_2254_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15523..16257
DNA (735bp) protein (245aa)
Pyridoxal phosphate enzyme, YggS family n=1 Tax=Rhodanobacter denitrificans RepID=I4WKZ2_9GAMM
pyridoxal phosphate enzyme, YggS family
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:AGG88265.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2254_curated_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16439..17137
DNA (699bp) protein (233aa)
Cell wall-associated hydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM31_9GAMM
cell wall-associated hydrolase, invasion-associated protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2254_curated_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17280..17930
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJI8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87379.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2254_curated_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18046..20886)
DNA (2841bp) protein (947aa)
RNA polymerase-associated protein RapA {ECO:0000256|HAMAP-Rule:MF_01821, ECO:0000256|SAAS:SAAS00010031}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01821, ECO:0000256|SAAS:SAAS00010033};; ATP-dependent helicase HepA {ECO:0000256|HAMAP-Rule:MF_01821}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RNA polymerase-associated protein RapA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM34_9GAMM
DNA/RNA helicase, superfamily II, SNF2 family
scnpilot_solids2_trim150_scaffold_2254_curated_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20957..21637)
DNA (681bp) protein (227aa)
PKHD-type hydroxylase UU9_16436 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
PKHD-type hydroxylase ybiX; K07336 PKHD-type hydroxylase [EC:1.14.11.-]
PKHD-type hydroxylase UU9_16436 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJJ0_9GAMM
scnpilot_solids2_trim150_scaffold_2254_curated_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21666..23054)
DNA (1389bp) protein (463aa)
Catecholate siderophore receptor Fiu n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5K7_9GAMM
Catecholate siderophore receptor Fiu {ECO:0000313|EMBL:EIL94748.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
catecholate siderophore receptor Fiu; K02014 iron complex outermembrane recepter protein
Displaying 19 items

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