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scnpilot_solids2_trim150_scaffold_1487_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1487_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..164)
DNA (162bp) protein (54aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
GTP cyclohydrolase 1 n=1 Tax=Rhodanobacter denitrificans RepID=M4NDI4_9GAMM
GTP cyclohydrolase I
scnpilot_solids2_trim150_scaffold_1487_curated_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(321..1766)
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2W8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93809.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1487_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1894..3087
DNA (1194bp) protein (398aa)
NAD(P)H-nitrite reductase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAH2_9GAMM
NAD(P)H-nitrite reductase
NAD(P)H-nitrite reductase {ECO:0000313|EMBL:AGG87490.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1487_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3213..4385)
DNA (1173bp) protein (391aa)
putative SAM-dependent methyltransferase (EC:2.1.1.-)
Putative SAM-dependent methyltransferase {ECO:0000313|EMBL:AGG87492.1}; EC=2.1.1.- {ECO:0000313|EMBL:AGG87492.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Putative SAM-dependent methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCK7_9GAMM
scnpilot_solids2_trim150_scaffold_1487_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4424..4858)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHU2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87493.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1487_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4964..5920)
DNA (957bp) protein (319aa)
Serine/threonine protein kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHT9_9GAMM
Serine/threonine protein kinase {ECO:0000313|EMBL:EIL98924.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative homoserine kinase type II (protein kinase fold)
scnpilot_solids2_trim150_scaffold_1487_curated_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6006..6446)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHT8_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1487_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6474..7562
DNA (1089bp) protein (363aa)
CDP-6-deoxy-delta-3,4-glucoseen reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHT7_9GAMM
2-polyprenylphenol hydroxylase-like oxidoreductase
2-polyprenylphenol hydroxylase-like oxidoreductase {ECO:0000313|EMBL:AGG87498.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1487_curated_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7649..8095)
DNA (447bp) protein (149aa)
Rhodanese-related sulfurtransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAK0_9GAMM
Rhodanese-related sulfurtransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1487_curated_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8178..8591)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHH9_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1487_curated_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8633..9118)
DNA (486bp) protein (162aa)
Thioesterase-like protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NI83_9GAMM
thioesterase-like protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1487_curated_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9177..9968
DNA (792bp) protein (264aa)
Uroporphyrinogen-III synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2V5_9GAMM
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:EIL93796.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
uroporphyrinogen-III synthase
scnpilot_solids2_trim150_scaffold_1487_curated_13
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10018..11199
DNA (1182bp) protein (394aa)
Uroporphyrin-III C-methyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2V4_9GAMM
putative enzyme of heme biosynthesis
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1487_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11196..12449
DNA (1254bp) protein (418aa)
Putative enzyme of heme biosynthesis n=1 Tax=Rhodanobacter denitrificans RepID=I4WHK2_9GAMM
putative enzyme of heme biosynthesis
Putative enzyme of heme biosynthesis {ECO:0000313|EMBL:AGG87504.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1487_curated_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12553..13572
DNA (1020bp) protein (340aa)
Alpha/beta hydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHK3_9GAMM
Alpha/beta hydrolase {ECO:0000313|EMBL:EIL96574.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative hydrolase or acyltransferase of alpha/beta superfamily
scnpilot_solids2_trim150_scaffold_1487_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13585..15606)
DNA (2022bp) protein (674aa)
Trypsin-like serine protease with C-terminal PDZ domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WWZ6_9GAMM
trypsin-like serine protease with C-terminal PDZ domain
Trypsin-like serine protease with C-terminal PDZ domain {ECO:0000313|EMBL:AGG87356.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1487_curated_17
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15725..18103)
DNA (2379bp) protein (793aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;"
DNA-dependent helicase n=1 Tax=Amphritea japonica RepID=UPI0003664B0E
DNA/RNA helicase, superfamily I
scnpilot_solids2_trim150_scaffold_1487_curated_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18165..18383)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHK5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87507.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1487_curated_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18747..21563)
DNA (2817bp) protein (939aa)
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAT6_9GAMM
DNA polymerase I {ECO:0000313|EMBL:EIL96577.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_1487_curated_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21657..22172
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAT7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96578.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF2782)
scnpilot_solids2_trim150_scaffold_1487_curated_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22195..22905)
DNA (711bp) protein (237aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHK8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87510.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1487_curated_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23122..24732)
DNA (1611bp) protein (537aa)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Rhodanobacter denitrificans RepID=M4NI91_9GAMM
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1487_curated_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24857..25162)
DNA (306bp) protein (102aa)
Global DNA-binding transcriptional dual regulator Fis n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPW4_9GAMM
Factor for inversion stimulation Fis, transcriptional activator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1487_curated_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25377..26222)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2U5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93786.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF3426)
scnpilot_solids2_trim150_scaffold_1487_curated_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26329..27228)
DNA (900bp) protein (300aa)
(LSU ribosomal protein L11P)-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribosomal protein L11 methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHL2_9GAMM
scnpilot_solids2_trim150_scaffold_1487_curated_26
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27350..27706)
DNA (357bp) protein (119aa)
Acetyl-CoA carboxylase biotin carboxylase subunit {ECO:0000313|EMBL:EIL89252.1}; EC=6.4.1.2 {ECO:0000313|EMBL:EIL89252.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPW1_9GAMM
acetyl-CoA carboxylase, biotin carboxylase subunit
Displaying 26 items

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