ggKbase home page

scnpilot_solids2_trim150_scaffold_4287_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_4287_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..179
DNA (177bp) protein (59aa)
RNAse PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribonuclease PH n=1 Tax=Rhodanobacter denitrificans RepID=I4WVY6_9GAMM
scnpilot_solids2_trim150_scaffold_4287_curated_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


343..945
DNA (603bp) protein (201aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae
Non-canonical purine NTP pyrophosphatase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNI8_9GAMM
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
scnpilot_solids2_trim150_scaffold_4287_curated_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

942..2108
DNA (1167bp) protein (389aa)
HemN family oxidoreductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVY8_9GAMM
putative oxygen-independent coproporphyrinogen III oxidase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_4287_curated_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2182..4506
DNA (2325bp) protein (775aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2C7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93618.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF1631)
scnpilot_solids2_trim150_scaffold_4287_curated_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4503..4862
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2C8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93619.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PilZ domain-containing protein
scnpilot_solids2_trim150_scaffold_4287_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4976..6292
DNA (1317bp) protein (439aa)
Xaa-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582}; Short=X-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279};; EC=3.4.13.9 {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582};; Imidodipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; Proline dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Xaa-Pro dipeptidase (EC:3.4.13.9)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C2304
scnpilot_solids2_trim150_scaffold_4287_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6488..6718
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90432.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_4287_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6715..8031
DNA (1317bp) protein (439aa)
cytochrome bd-type quinol oxidase, subunit 1 (EC:1.10.3.-)
Cytochrome D ubiquinol oxidase, subunit I n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN41_9GAMM
Cytochrome D ubiquinol oxidase, subunit I {ECO:0000313|EMBL:EIM00883.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_4287_curated_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8053..9183
DNA (1131bp) protein (377aa)
cytochrome d oxidase cyd, subunit II (EC:1.10.3.-)
Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN42_9GAMM
Cytochrome d ubiquinol oxidase subunit II {ECO:0000313|EMBL:EIM00884.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_4287_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9199..9333
DNA (135bp) protein (45aa)
Cyd operon protein YbgT n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN43_9GAMM
Cyd operon protein YbgT {ECO:0000313|EMBL:EIM00885.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cyd operon protein YbgT
scnpilot_solids2_trim150_scaffold_4287_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9367..10707)
DNA (1341bp) protein (447aa)
aminopeptidase P (EC:3.4.11.9)
Aminopeptidase P {ECO:0000313|EMBL:AGG90436.1}; EC=3.4.11.9 {ECO:0000313|EMBL:AGG90436.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Aminopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ6_9GAMM
scnpilot_solids2_trim150_scaffold_4287_curated_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10704..11267)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN45_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIM00887.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_4287_curated_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11375..11608
DNA (234bp) protein (78aa)
TIGR02449 family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ8_9GAMM
TIGR02449 family protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_4287_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11617..11925
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ9_9GAMM
hypothetical protein
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_4287_curated_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12257..12889
DNA (633bp) protein (211aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1U3_9GAMM
5,10-methenyltetrahydrofolate synthetase
scnpilot_solids2_trim150_scaffold_4287_curated_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12886..12999
DNA (114bp) protein (38aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIK8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87049.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
Displaying 16 items

View Taxonomy