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scnpilot_solids2_trim150_scaffold_2323_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2323_curated_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..470)
DNA (468bp) protein (156aa)
Phenylalanine 4-monooxygenase {ECO:0000313|EMBL:EIL88440.1}; EC=1.14.16.1 {ECO:0000313|EMBL:EIL88440.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Phenylalanine 4-hydroxylase (EC:1.14.16.1)
Phenylalanine 4-monooxygenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VMJ9_9GAMM
scnpilot_solids2_trim150_scaffold_2323_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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611..1087
DNA (477bp) protein (159aa)
AsnC family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WUM0_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG87224.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2323_curated_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1160..1960
DNA (801bp) protein (267aa)
Acetyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VMJ7_9GAMM
Acetyltransferase {ECO:0000313|EMBL:EIL88438.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
1-acyl-sn-glycerol-3-phosphate acyltransferase
scnpilot_solids2_trim150_scaffold_2323_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1957..2976
DNA (1020bp) protein (340aa)
Putative hydrolase of the alpha/beta-hydrolase fold protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUM2_9GAMM
putative hydrolase of the alpha/beta-hydrolase fold protein
Putative hydrolase of the alpha/beta-hydrolase fold protein {ECO:0000313|EMBL:AGG87226.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2323_curated_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3036..3641)
DNA (606bp) protein (202aa)
2OG-Fe(II) oxygenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUM4_9GAMM
putative proline hydroxylase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2323_curated_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3728..3979)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL38_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87929.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2323_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3946..5415)
DNA (1470bp) protein (490aa)
AAA+ family ATPase n=1 Tax=Rhodanobacter denitrificans RepID=M4NA36_9GAMM
AAA+ family ATPase
AAA+ family ATPase {ECO:0000313|EMBL:AGG87234.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2323_curated_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5517..6140
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU66_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90757.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phospholipid-binding protein, PBP family
scnpilot_solids2_trim150_scaffold_2323_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6249..6404
DNA (156bp) protein (52aa)
UPF0391 membrane protein UUC_07426 n=1 Tax=Rhodanobacter denitrificans RepID=I4WUN3_9GAMM
Protein of unknown function (DUF1328)
UPF0391 membrane protein R2APBS1_0050 {ECO:0000256|HAMAP-Rule:MF_01361}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2323_curated_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6430..6807
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA39_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2323_curated_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6815..7297
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU63_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90754.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2323_curated_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7294..7626
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL33_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87924.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2323_curated_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7623..8819
DNA (1197bp) protein (399aa)
Putative permease (Fragment) n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WC14_9GAMM
Putative permease {ECO:0000313|EMBL:EIL97005.1}; Flags: Fragment;; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease
scnpilot_solids2_trim150_scaffold_2323_curated_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8890..9210
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NCT3_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2323_curated_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9207..9572
DNA (366bp) protein (122aa)
Mannose-6-phosphate isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUN8_9GAMM
mannose-6-phosphate isomerase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2323_curated_16
unknown

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comp(9676..10146)
DNA (471bp) protein (157aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2323_curated_17
Streptomyces vietnamensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11179..11676
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00036E6DAE
Uncharacterized protein {ECO:0000313|EMBL:AJF70345.1}; TaxID=362257 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces vietnamensis.;"
scnpilot_solids2_trim150_scaffold_2323_curated_18

Not on your lists

12193..12354
DNA (162bp) protein (54aa)
Putative integron gene cassette protein n=1 Tax=uncultured bacterium RepID=B7VCK1_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAS02355.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_solids2_trim150_scaffold_2323_curated_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12735..13439)
DNA (705bp) protein (235aa)
Response regulator of the LytR/AlgR family n=1 Tax=Rhodanobacter denitrificans RepID=M4NA61_9GAMM
response regulator of the LytR/AlgR family
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2323_curated_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13439..14491)
DNA (1053bp) protein (351aa)
Histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NHJ0_9GAMM
Histidine kinase
Histidine kinase {ECO:0000313|EMBL:AGG87296.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 20 items

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