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scnpilot_solids2_trim150_scaffold_3530_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3530_curated_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..473)
DNA (471bp) protein (157aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VPN2_9GAMM
scnpilot_solids2_trim150_scaffold_3530_curated_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(897..1568)
DNA (672bp) protein (224aa)
DNA repair protein radc n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VPN1_9GAMM
DNA repair protein radc {ECO:0000313|EMBL:EIL89172.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA repair protein
scnpilot_solids2_trim150_scaffold_3530_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1666..2871
DNA (1206bp) protein (402aa)
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase {ECO:0000313|EMBL:EIL89171.1}; EC=6.3.2.5 {ECO:0000313|EMBL:EIL89171.1};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (EC:4.1.1.36 6.3.2.5)
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VPN0_9GAMM
scnpilot_solids2_trim150_scaffold_3530_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2868..3326
DNA (459bp) protein (153aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBY0_9GAMM
scnpilot_solids2_trim150_scaffold_3530_curated_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3328..5691
DNA (2364bp) protein (788aa)
Phosphomannomutase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGW4_9GAMM
phosphomannomutase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_3530_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5754..6395)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NLF6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90902.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3530_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6675..7364)
DNA (690bp) protein (230aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Orotate phosphoribosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NTU6_9GAMM
orotate phosphoribosyltransferase
scnpilot_solids2_trim150_scaffold_3530_curated_8
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7424..8191
DNA (768bp) protein (256aa)
catabolite repression control protein n=1 Tax=Dyella japonica RepID=UPI000307FCA8
DNA-(Apurinic or apyrimidinic site) lyase {ECO:0000313|EMBL:AIF46260.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
exodeoxyribonuclease III
scnpilot_solids2_trim150_scaffold_3530_curated_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8181..9497
DNA (1317bp) protein (439aa)
Signal transducer n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBX5_9GAMM
Signal transducer {ECO:0000313|EMBL:EIL96966.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Major Facilitator Superfamily transporter
scnpilot_solids2_trim150_scaffold_3530_curated_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9606..9938
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VPM3_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_3530_curated_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9908..11041)
DNA (1134bp) protein (378aa)
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGV8_9GAMM
molecular chaperone
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_3530_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11055..12500)
DNA (1446bp) protein (482aa)
Metalloendopeptidase-like membrane protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NTT7_9GAMM
metalloendopeptidase-like membrane protein
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:AGG90896.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3530_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12707..13918
DNA (1212bp) protein (404aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGV6_9GAMM
Displaying 13 items

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