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scnpilot_solids2_trim150_scaffold_1688_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1688_curated_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..656)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NE87_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1688_curated_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(685..1578)
DNA (894bp) protein (298aa)
UbiA prenyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCD0_9GAMM
UbiA prenyltransferase {ECO:0000313|EMBL:EIL97121.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase
scnpilot_solids2_trim150_scaffold_1688_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1583..2293)
DNA (711bp) protein (237aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIC9_9GAMM
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1688_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2271..3419)
DNA (1149bp) protein (383aa)
3-dehydroquinate synthetase (EC:4.2.3.4)
2-epi-5-epi-valiolone synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCD2_9GAMM
3-dehydroquinate synthase {ECO:0000256|SAAS:SAAS00196478}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_1688_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3416..3907)
DNA (492bp) protein (164aa)
S-ribosylhomocysteine lyase {ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|SAAS:SAAS00059628};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
LuxS protein involved in autoinducer AI2 synthesis n=1 Tax=Rhodanobacter denitrificans RepID=M4NKU1_9GAMM
LuxS protein involved in autoinducer AI2 synthesis
scnpilot_solids2_trim150_scaffold_1688_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3904..5139)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCD4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97125.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
sugar phosphate isomerase/epimerase
scnpilot_solids2_trim150_scaffold_1688_curated_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5313..6602)
DNA (1290bp) protein (430aa)
Cytochrome c, class I n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXY7_9GAMM
Cytochrome c, class I {ECO:0000313|EMBL:EIL92078.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome c, mono- and diheme variants family
scnpilot_solids2_trim150_scaffold_1688_curated_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6599..7276)
DNA (678bp) protein (226aa)
Cytochrome c n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXY6_9GAMM
cytochrome c553
Cytochrome c {ECO:0000313|EMBL:EIL92077.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_1688_curated_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7727..8878
DNA (1152bp) protein (384aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXY5_9GAMM
scnpilot_solids2_trim150_scaffold_1688_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8875..9870
DNA (996bp) protein (332aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
homoserine kinase (EC:2.7.1.39)
Homoserine kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCD8_9GAMM
scnpilot_solids2_trim150_scaffold_1688_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10037..11362
DNA (1326bp) protein (442aa)
Threonine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIH9_9GAMM
threonine synthase
Threonine synthase {ECO:0000313|EMBL:AGG90709.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1688_curated_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11478..11822
DNA (345bp) protein (115aa)
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
scnpilot_solids2_trim150_scaffold_1688_curated_13
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11815..12606
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Pseudomonas syringae RepID=UPI0002EA1068
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
scnpilot_solids2_trim150_scaffold_1688_curated_14
unknown

Not on your lists

12703..13713
DNA (1011bp) protein (337aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1688_curated_15
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13725..14297
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Neisseria sp. oral taxon 014 str. F0314 RepID=D7MZE3_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:KJV37373.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
scnpilot_solids2_trim150_scaffold_1688_curated_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14463..14600
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NID9_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1688_curated_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14718..16361
DNA (1644bp) protein (548aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9C2_9GAMM
scnpilot_solids2_trim150_scaffold_1688_curated_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16358..17299
DNA (942bp) protein (314aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:EIL97134.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EIL97134.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched-chain amino acid aminotransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCE3_9GAMM
scnpilot_solids2_trim150_scaffold_1688_curated_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17299..18711
DNA (1413bp) protein (471aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCE4_9GAMM
3-isopropylmalate dehydratase, large subunit
scnpilot_solids2_trim150_scaffold_1688_curated_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18708..19292
DNA (585bp) protein (195aa)
3-isopropylmalate dehydratase small subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WK96_9GAMM
3-isopropylmalate dehydratase, small subunit
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1688_curated_21
unknown

Not on your lists

19289..19444
DNA (156bp) protein (52aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1688_curated_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19441..20538
DNA (1098bp) protein (366aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-isopropylmalate dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WK95_9GAMM
3-isopropylmalate dehydrogenase
scnpilot_solids2_trim150_scaffold_1688_curated_23
unknown

Not on your lists

20529..20723
DNA (195bp) protein (65aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1688_curated_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20713..22425
DNA (1713bp) protein (571aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Dihydroxy-acid dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGI9_9GAMM
dihydroxyacid dehydratase/phosphogluconate dehydratase
scnpilot_solids2_trim150_scaffold_1688_curated_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22422..23432
DNA (1011bp) protein (337aa)
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ketol-acid reductoisomerase n=1 Tax=Rhodanobacter denitrificans RepID=M4NKV8_9GAMM
scnpilot_solids2_trim150_scaffold_1688_curated_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23501..23842
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9C7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96068.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1688_curated_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23892..25754
DNA (1863bp) protein (621aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acetolactate synthase, large subunit (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXX5_9GAMM
scnpilot_solids2_trim150_scaffold_1688_curated_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25936..26184
DNA (249bp) protein (83aa)
acetolactate synthase, small subunit (EC:2.2.1.6)
Acetolactate synthase small subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXX4_9GAMM
Acetolactate synthase small subunit {ECO:0000313|EMBL:EIL92065.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_1688_curated_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26181..27728
DNA (1548bp) protein (516aa)
L-threonine ammonia-lyase (EC:4.3.1.19)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Threonine dehydratase n=1 Tax=Rhodanobacter denitrificans RepID=I4WK90_9GAMM
scnpilot_solids2_trim150_scaffold_1688_curated_30
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27837..30782)
DNA (2946bp) protein (982aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000305AB79
TonB-dependent receptor {ECO:0000313|EMBL:AIF46246.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
Displaying items 1-30 of 31 in total

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