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scnpilot_solids2_trim150_scaffold_3239_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3239_curated_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..363
DNA (363bp) protein (121aa)
Magnesium-transporting ATPase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ78_9GAMM
magnesium-translocating P-type ATPase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_3239_curated_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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698..2038
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000302D8A6
Transposase {ECO:0000313|EMBL:KDE89565.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
putative transposase
scnpilot_solids2_trim150_scaffold_3239_curated_3
unknown

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comp(2062..2499)
DNA (438bp) protein (146aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_3239_curated_4
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2472..3224)
DNA (753bp) protein (251aa)
Uncharacterized protein (Fragment) n=1 Tax=Xanthomonas axonopodis pv. malvacearum str. GSPB1386 RepID=K8FSD1_9XANT
Uncharacterized protein {ECO:0000313|EMBL:EKQ58341.1}; Flags: Fragment;; TaxID=1127439 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. malvacearum str. GSPB2388.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_3239_curated_5
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3224..4111)
DNA (888bp) protein (296aa)
Uncharacterized protein (Fragment) n=2 Tax=Firmicutes RepID=B0NX30_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDS23159.1}; Flags: Fragment;; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_3239_curated_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4504..5505)
DNA (1002bp) protein (334aa)
Sodium/bile acid symporter family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHC0_9GAMM
putative Na+-dependent transporter
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_3239_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5515..6135)
DNA (621bp) protein (207aa)
DedA protein family n=1 Tax=Rhodanobacter denitrificans RepID=I4WHX0_9GAMM
putative membrane-associated protein
Putative membrane-associated protein {ECO:0000313|EMBL:AGG87464.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3239_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6467..8254)
DNA (1788bp) protein (596aa)
DNA primase (EC:2.7.7.-)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA primase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHW9_9GAMM
scnpilot_solids2_trim150_scaffold_3239_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8369..8539)
DNA (171bp) protein (57aa)
UPF0391 membrane protein UUC_16285 n=1 Tax=Rhodanobacter denitrificans RepID=I4WHW8_9GAMM
Protein of unknown function (DUF1328)
UPF0391 membrane protein R2APBS1_0290 {ECO:0000256|HAMAP-Rule:MF_01361}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3239_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8644..9090)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDG3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIL98856.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_3239_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9263..9478)
DNA (216bp) protein (72aa)
30S ribosomal protein S21 n=4 Tax=Rhodanobacter RepID=I4WHW5_9GAMM
SSU ribosomal protein S21P
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3239_curated_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9547..10608
DNA (1062bp) protein (354aa)
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammapr
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAG4_9GAMM
scnpilot_solids2_trim150_scaffold_3239_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10655..11374)
DNA (720bp) protein (240aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2Z3_9GAMM
pseudouridine synthase family protein
scnpilot_solids2_trim150_scaffold_3239_curated_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11518..12294)
DNA (777bp) protein (259aa)
Inner membrane transport permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2Z2_9GAMM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ABC-type polysaccharide/polyol phosphate export systems, permease component
scnpilot_solids2_trim150_scaffold_3239_curated_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12291..12986)
DNA (696bp) protein (232aa)
Multidrug ABC transporter ATPase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2Z1_9GAMM
Multidrug ABC transporter ATPase {ECO:0000313|EMBL:EIL93832.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ABC-type multidrug transport system, ATPase component
Displaying 15 items

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